RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CCDC43Q96MW1 224 aaKnown RBP5.98□□□□□ -1.45
SCFD1-208ENST00000553278 NAA11Q9BSU3 229 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-208ENST00000553278 NUAK2Q9H093 628 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 TRPV4Q9HBA0 871 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 CD248Q9HCU0 757 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 PARPBPQ9NWS1 579 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 TUBE1Q9UJT0 475 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 KNSTRNQ9Y448 316 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 CMAHPQ9Y471 501 aa5.98□□□□□ -1.45
SCFD1-208ENST00000553278 GPRASP1Q5JY77 1395 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 FAM237AA0A1B0GTK4 181 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CBY3A6NI87 242 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 IFNL4K9M1U5 179 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 KIF1CO43896 1103 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 EXOC3O60645 756 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 GOSR1O95249 250 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 EGR2P11161 476 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 IL7RP16871 459 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 STMN1P16949 149 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 ERCC2P18074 760 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 TRIM21P19474 475 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 EDN2P20800 178 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 YWHAQP27348 245 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CSE1LP55060 971 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 TMF1P82094 1093 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 FZD5Q13467 585 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 SHBQ15464 509 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 PFKFB3Q16875 520 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CC2D1BQ5T0F9 858 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 PMS2CLQ68D20 193 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CAVIN1Q6NZI2 390 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 ZNF474Q6S9Z5 364 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CFAP77Q6ZQR2 320 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 GLRX5Q86SX6 157 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 TBC1D26Q86UD7 250 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 UEVLDQ8IX04 471 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 DHX40Q8IX18 779 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 HACE1Q8IYU2 909 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 TMEM217Q8N7C4 229 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 TERB1Q8NA31 727 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 FAM47BQ8NA70 645 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 FAR1Q8WVX9 515 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 RSPH1Q8WYR4 309 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 IP6K1Q92551 441 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CCDC47Q96A33 483 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 LRRC59Q96AG4 307 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 PTERQ96BW5 349 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 CCDC17Q96LX7 622 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 SH3BP4Q9P0V3 963 aa5.97□□□□□ -1.45
SCFD1-208ENST00000553278 EXO1Q9UQ84 846 aaKnown RBP5.97□□□□□ -1.45
SCFD1-208ENST00000553278 LOC102723996A0A087X1L8 192 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 TRAV34A0A0B4J273 112 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 CCDC151A5D8V7 595 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 MSI1O43347 362 aaKnown RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 HTATSF1O43719 755 aaKnown RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 DIAPH2O60879 1101 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 GPC4O75487 556 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 GCATO75600 419 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 ATF7P17544 494 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 NR4A1P22736 598 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 CHRNA5P30532 468 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 TCF7P36402 384 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 CCR3P51677 355 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 BLOC1S1P78537 153 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 IL11RAQ14626 422 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SMC1AQ14683 1233 aaKnown RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SLMAPQ14BN4 828 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 TNIP1Q15025 636 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 LARS2Q15031 903 aaKnown RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 PKN1Q16512 942 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 LETM2Q2VYF4 491 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 IYDQ6PHW0 289 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 TRAT1Q6PIZ9 186 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 CLEC17AQ6ZS10 378 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SEPT14Q6ZU15 432 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 WDR5BQ86VZ2 330 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 RNF168Q8IYW5 571 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 OR8H1Q8NGG4 311 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 HDAC7Q8WUI4 952 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SNX21Q969T3 373 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SIN3AQ96ST3 1273 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 GAD1Q99259 594 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 XYLT2Q9H1B5 865 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 LRIT1Q9P2V4 623 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 SLC8A2Q9UPR5 921 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 POMT1Q9Y6A1 747 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 MAU2Q9Y6X3 613 aa5.96□□□□□ -1.46
SCFD1-208ENST00000553278 ARID1BQ8NFD5 2236 aaPredicted RBP5.96□□□□□ -1.46
SCFD1-208ENST00000553278 ADAMTS20P59510 1910 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 CENPVL1A0A0U1RR11 272 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 ARHGEF37A1IGU5 675 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 PIPSLA2A3N6 862 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 TYW5A2RUC4 315 aaKnown RBP5.95□□□□□ -1.46
SCFD1-208ENST00000553278 FAM157AC9JC47 383 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 BTBD19C9JJ37 291 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 RECQL5O94762 991 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-208ENST00000553278 FTCDO95954 541 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 ELFN1P0C7U0 828 aa5.95□□□□□ -1.46
SCFD1-208ENST00000553278 ITGAXP20702 1163 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms