RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	NEMP1	O14524	444 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	MATN3	O15232	486 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	YKT6	O15498	198 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	FLRT2	O43155	660 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	PJA2	O43164	708 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SPOP	O43791	374 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SOCS5	O75159	536 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	CCNC	P24863	283 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	MMP13	P45452	471 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	NOP2	P46087	812 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	RXRG	P48443	463 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SCNN1B	P51168	640 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	GBE1	Q04446	702 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	BCL2L1	Q07817	233 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	ELP6	Q0PNE2	266 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SUZ12	Q15022	739 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	TAZ	Q16635	292 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	IFI16	Q16666	785 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	TMEM52B	Q4KMG9	183 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	ZFYVE27	Q5T4F4	411 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	MARC1	Q5VT66	337 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	ALG1L	Q6GMV1	187 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	TIGD7	Q6NT04	549 aa	Predicted RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	GCNT7	Q6ZNI0	430 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	ZSWIM9	Q86XI8	627 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SPATS2	Q86XZ4	545 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	CAMK1D	Q8IU85	385 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	NAXD	Q8IW45	347 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	PGBD5	Q8N414	524 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	PLD5	Q8N7P1	536 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	KLK6	Q92876	244 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	HDAC11	Q96DB2	347 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	NSMCE3	Q96MG7	304 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	KLF6	Q99612	283 aa	Predicted RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	GPR27	Q9NS67	375 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	DTL	Q9NZJ0	730 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	AMACR	Q9UHK6	382 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	GGT7	Q9UJ14	662 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	SALL4	Q9UJQ4	1053 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	ITM2B	Q9Y287	266 aa		11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	TPR	P12270	2363 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-217	ENST00000546164	CFAP69	A5D8W1	941 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	RCCD1	A6NED2	376 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	IGLON5	A6NGN9	336 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164		A6NNZ2	444 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	KCNK3	O14649	394 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	RIOK3	O14730	519 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	GIPC1	O14908	333 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	HTRA2	O43464	458 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	SH3BP5	O60239	455 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	CBFA2T3	O75081	653 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	PAK4	O96013	591 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	KRT1	P04264	644 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	ZFX	P17010	805 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	XPA	P23025	273 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	ARRB1	P49407	418 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	VAV2	P52735	878 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	POLR2L	P62875	67 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	SLC10A2	Q12908	348 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	SGCG	Q13326	291 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	AGER	Q15109	404 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	SHB	Q15464	509 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	CFAP58	Q5T655	872 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	ERAP2	Q6P179	960 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	KYAT3	Q6YP21	454 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	DCP2	Q8IU60	420 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	TPCN2	Q8NHX9	752 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	BAHD1	Q8TBE0	780 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	KLHDC7B	Q96G42	594 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	BMF	Q96LC9	184 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	PCDH12	Q9NPG4	1184 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	PCOLCE2	Q9UKZ9	415 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	TFR2	Q9UP52	801 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	CA5B	Q9Y2D0	317 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	ATP8A1	Q9Y2Q0	1164 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	HYOU1	Q9Y4L1	999 aa		11.97	□□□□□ -0.49
YBX3-217	ENST00000546164	DOCK9	Q9BZ29	2069 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	ACACB	O00763	2458 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	APOL1	O14791	398 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	RAD51B	O15315	384 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	TM7SF2	O76062	418 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	MAP3K6	O95382	1288 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	THEGL	P0DJG4	465 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	ITIH2	P19823	946 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	CES1	P23141	567 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	EPHA8	P29322	1005 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	MMP12	P39900	470 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	CDKN2B	P42772	138 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	GRK6	P43250	576 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	PPID	Q08752	370 aa	Known RBP	11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	INAVA	Q3KP66	663 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	LRRC73	Q5JTD7	316 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	MFSD7	Q6UXD7	560 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	GLRX5	Q86SX6	157 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	CCDC13	Q8IYE1	715 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	KATNAL2	Q8IYT4	538 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	OR13H1	Q8NG92	308 aa		11.96	□□□□□ -0.49
YBX3-217	ENST00000546164	CXorf40A	Q8TE69	158 aa		11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms