RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CYP4F2P78329 520 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 IRF4Q15306 451 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 ARHGAP44Q17R89 818 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 KLHL40Q2TBA0 621 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 DPCR1Q3MIW9 517 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 LRRC73Q5JTD7 316 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 MANEALQ5VSG8 457 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 KCTD16Q68DU8 428 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 OGFOD3Q6PK18 319 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 RBM43Q6ZSC3 357 aaKnown RBP12.98□□□□□ -0.33
USP28-212ENST00000544750 TMPRSS9Q7Z410 1059 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 NLRP14Q86W24 1093 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 SLITRK4Q8IW52 837 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 SCG3Q8WXD2 468 aaKnown RBP12.98□□□□□ -0.33
USP28-212ENST00000544750 TSACCQ96A04 125 aaPredicted RBP12.98□□□□□ -0.33
USP28-212ENST00000544750 TMEM159Q96B96 161 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 FAM81BQ96LP2 452 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 CRACR2AQ9BSW2 395 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 SLC12A9Q9BXP2 914 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 OSBPL1AQ9BXW6 950 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 B3GNT4Q9C0J1 378 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 WDR70Q9NW82 654 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 TMEM51Q9NW97 253 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 SEPT10Q9P0V9 454 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 RWDD2AQ9UIY3 292 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 AJAP1Q9UKB5 411 aaPredicted RBP12.98□□□□□ -0.33
USP28-212ENST00000544750 GPR34Q9UPC5 381 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 PAXBP1Q9Y5B6 917 aa12.98□□□□□ -0.33
USP28-212ENST00000544750 USP9XQ93008 2570 aaPredicted RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 KRIT1O00522 736 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 POP4O95707 220 aaKnown RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 PNLIPP16233 465 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 CD82P27701 267 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 CDH5P33151 784 aaPredicted RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 USP8P40818 1118 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 SNX16P57768 344 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 RNASE9P60153 205 aaKnown RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 SNRPD1P62314 119 aaKnown RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 NRG1Q02297 640 aaPredicted RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 UBAP2LQ14157 1087 aaKnown RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 MYLK3Q32MK0 819 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 TMEM52BQ4KMG9 183 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 CERCAMQ5T4B2 595 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 TTC7BQ86TV6 843 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 GKN2Q86XP6 184 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 CCNJLQ8IV13 435 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 HID1Q8IV36 788 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 DRC7Q8IY82 874 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 MLKLQ8NB16 471 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 USP7Q93009 1102 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 RBM15Q96T37 977 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP28-212ENST00000544750 ADNPQ9H2P0 1102 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 PLCB1Q9NQ66 1216 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 APEX2Q9UBZ4 518 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 DOLKQ9UPQ8 538 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 NEU3Q9UQ49 428 aa12.97□□□□□ -0.33
USP28-212ENST00000544750 UTP20O75691 2785 aaKnown RBP12.97□□□□□ -0.33
USP28-212ENST00000544750 ICE1Q9Y2F5 2266 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SPTAN1Q13813 2472 aaKnown RBP12.96□□□□□ -0.33
USP28-212ENST00000544750 TMEM110-MUSTN1A8MSY1 372 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 RASGRP1O95267 797 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 GP1BBP13224 206 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 CTSEP14091 401 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 TIMP2P16035 220 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 GLB1P16278 677 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 ARSDP51689 593 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 PTK2Q05397 1052 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 NFATC4Q14934 902 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 AGERQ15109 404 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 TCEA2Q15560 299 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 WSCD2Q2TBF2 565 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 ATXN7L2Q5T6C5 722 aaPredicted RBP12.96□□□□□ -0.33
USP28-212ENST00000544750 GDPD4Q6W3E5 623 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SPRED1Q7Z699 444 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SLC47A2Q86VL8 602 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 XYLT1Q86Y38 959 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 IRF2BP1Q8IU81 584 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SFTPA2Q8IWL1 248 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 RYBPQ8N488 228 aaPredicted RBP12.96□□□□□ -0.33
USP28-212ENST00000544750 ZSCAN1Q8NBB4 408 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 CXorf40AQ8TE69 158 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 APOOQ9BUR5 198 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 C1QTNF7Q9BXJ2 289 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 RETREG1Q9H6L5 497 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SIX2Q9NPC8 291 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 DKK3Q9UBP4 350 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 TMEM59LQ9UK28 342 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 COQ6Q9Y2Z9 468 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 MFHAS1Q9Y4C4 1052 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 DGKBQ9Y6T7 804 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 RNF215Q9Y6U7 377 aa12.96□□□□□ -0.33
USP28-212ENST00000544750 SPTBN1Q01082 2364 aaKnown RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 CR2P20023 1033 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 KRT9P35527 623 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 ETFBP38117 255 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 MAPKAPK2P49137 400 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 GEMIN4P57678 1058 aaKnown RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 SRP54P61011 504 aaKnown RBP12.95□□□□□ -0.34
USP28-212ENST00000544750 C16orf72Q14CZ0 275 aa12.95□□□□□ -0.34
USP28-212ENST00000544750 POLD3Q15054 466 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms