RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 GRIA4P48058 902 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 POLD2P49005 469 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 COPAP53621 1224 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 CCL23P55773 120 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LBRQ14739 615 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 SIRPB2Q5JXA9 342 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 RBM20Q5T481 1227 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 C1orf146Q5VVC0 180 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LIPMQ5VYY2 423 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 CAPRIN2Q6IMN6 1127 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LCA5Q86VQ0 697 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LGI2Q8N0V4 545 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 ZNF296Q8WUU4 475 aaPredicted RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 SREK1Q8WXA9 508 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 RANBP9Q96S59 729 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 OMDQ99983 421 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 TMEM175Q9BSA9 504 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 MRPL9Q9BYD2 267 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 GPAMQ9HCL2 828 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 COMMD8Q9NX08 183 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 XPR1Q9UBH6 696 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 MID2Q9UJV3 735 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 WASF2Q9Y6W5 498 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LAMA2P24043 3122 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 MAP3K7O43318 606 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 HOXA2O43364 376 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 PDHA1P08559 390 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 ATXN1LP0C7T5 689 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 NAGLUP54802 743 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 YBEYP58557 167 aaPredicted RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 AP2B1P63010 937 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 SLC9B1Q4ZJI4 515 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 EPGNQ6UW88 154 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 TDRD5Q8NAT2 981 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 C2orf15Q8WU43 125 aaKnown RBP13.48□□□□□ -0.25
VPS33B-202ENST00000535906 SPDL1Q96EA4 605 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 NDNQ99608 321 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 SEMA3CQ99985 751 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 TTLL2Q9BWV7 592 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 DRC3Q9H069 523 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 ACTL7AQ9Y615 435 aa13.48□□□□□ -0.25
VPS33B-202ENST00000535906 LOC285095A0A1B0GVY8 99 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 MROH6A6NGR9 719 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 DLX3O60479 287 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 PRAMEF11O60813 436 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 H2AFYO75367 372 aaKnown RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 GJB5O95377 273 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ANPEPP15144 967 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 PAX7P23759 505 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 MPSTP25325 297 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 CRABP2P29373 138 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 OR1D2P34982 312 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ATP5C1P36542 298 aaKnown RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 MAPKAPK2P49137 400 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ARSDP51689 593 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 SLC25A3Q00325 362 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 IRGCQ6NXR0 463 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 PTAR1Q7Z6K3 402 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 POU5F2Q8N7G0 328 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 OR52K2Q8NGK3 314 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 CMTM5Q96DZ9 223 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 OLFM1Q99784 485 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ILKAPQ9H0C8 392 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 UNC93B1Q9H1C4 597 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 KCTD3Q9Y597 815 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 F5H5T6 163 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 UPP2O95045 317 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 PAPSS2O95340 614 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 NCF2P19878 526 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 DNAJB1P25685 340 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 LEPRP48357 1165 aaKnown RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 KPNA1P52294 538 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 POU4F1Q01851 419 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ARL13AQ5H913 290 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 CFAP157Q5JU67 520 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ACBD5Q5T8D3 534 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 TMCO4Q5TGY1 634 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 SLC8B1Q6J4K2 584 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 KIAA0408Q6ZU52 694 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 LDB1Q86U70 411 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 HEXDCQ8WVB3 486 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 ZNF184Q99676 751 aaPredicted RBP13.47□□□□□ -0.25
VPS33B-202ENST00000535906 VN1R3Q9BXE9 311 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 PDFQ9HBH1 243 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 DNMT3LQ9UJW3 386 aa13.47□□□□□ -0.25
VPS33B-202ENST00000535906 CHD5Q8TDI0 1954 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 OR51F1A6NGY5 319 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 EIF4E1BA6NMX2 242 aaKnown RBP13.46□□□□□ -0.25
VPS33B-202ENST00000535906 LDB2O43679 373 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 ACSL4O60488 711 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 FKBP6O75344 327 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 EFEMP2O95967 443 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 ALDH7A1P49419 539 aaKnown RBP13.46□□□□□ -0.25
VPS33B-202ENST00000535906 DEFB128Q7Z7B8 93 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 CILP2Q8IUL8 1156 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 LRRC43Q8N309 656 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 PHTF2Q8N3S3 785 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 CALML6Q8TD86 181 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 HDAC10Q969S8 669 aa13.46□□□□□ -0.25
VPS33B-202ENST00000535906 ZNF512Q96ME7 567 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms