RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ANKRD20A4Q4UJ75 823 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 PKN3Q6P5Z2 889 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 KDM7AQ6ZMT4 941 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 TRIM67Q6ZTA4 783 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 SLC26A11Q86WA9 606 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 CPA6Q8N4T0 437 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 RANBP9Q96S59 729 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 C1QAP02745 245 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 GLULP15104 373 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 HLA-FP30511 346 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 RHOAP61586 193 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 DHCR24Q15392 516 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 SKIDA1Q1XH10 827 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 PITRM1Q5JRX3 1037 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 LINGO4Q6UY18 593 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 CTAGE3PQ8IX95 158 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 TTC8Q8TAM2 541 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 CNOT10Q9H9A5 744 aaKnown RBP21.39■■□□□ 1.01
VPS28-212ENST00000530836 NOD2Q9HC29 1040 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 GGA2Q9UJY4 613 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 ADAM21Q9UKJ8 722 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 CA14Q9ULX7 337 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 CLEC4EQ9ULY5 219 aa21.39■■□□□ 1.01
VPS28-212ENST00000530836 IQANK1A0A1B0GTG1 560 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 HEATR9A2RTY3 570 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 TPH1P17752 444 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 CSNK1DP48730 415 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 AP1S1P61966 158 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 PPP2R2AP63151 447 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 MGAT5Q09328 741 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 MLF2Q15773 248 aaPredicted RBP21.38■■□□□ 1.01
VPS28-212ENST00000530836 NLRP9Q7RTR0 991 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.38■■□□□ 1.014e-6■□□□□ 11.3
VPS28-212ENST00000530836 DCAKDQ8WVC6 231 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 ZNF669Q96BR6 464 aaPredicted RBP21.38■■□□□ 1.01
VPS28-212ENST00000530836 CERS2Q96G23 380 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 EPHX3Q9H6B9 360 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 C8orf33Q9H7E9 229 aaPredicted RBP21.38■■□□□ 1.01
VPS28-212ENST00000530836 ARHGEF3Q9NR81 526 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 LHX3Q9UBR4 397 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 CTNNAL1Q9UBT7 734 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 TBK1Q9UHD2 729 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 ACTL7AQ9Y615 435 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 PIAS3Q9Y6X2 628 aa21.38■■□□□ 1.01
VPS28-212ENST00000530836 KRBA1A5PL33 1030 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 HOXC11O43248 304 aaPredicted RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 NDST3O95803 873 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 CYP17A1P05093 508 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 PABPC1P11940 636 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 PAMP19021 973 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 PRKCQQ04759 706 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 TMED2Q15363 201 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 KIAA0907Q7Z7F0 614 aaPredicted RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 SIX5Q8N196 739 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 ISG20Q96AZ6 181 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 CHRAC1Q9NRG0 131 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 SLC25A13Q9UJS0 675 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 FBXO10Q9UK96 956 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 INTS6Q9UL03 887 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 HS3ST2Q9Y278 367 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 TCAF1Q9Y4C2 921 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 ZCWPW2A0A1B0GU75 182 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 ADH5P11766 374 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 KRT15P19012 456 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 CNTFP26441 200 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 HPDP32754 393 aaPredicted RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 NUMBP49757 651 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 SERPINB9P50453 376 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 POU6F1Q14863 301 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 EFTUD2Q15029 972 aaKnown RBP eCLIP21.37■■□□□ 1.012e-7■■■■□ 23.3
VPS28-212ENST00000530836 TRMT10BQ6PF06 316 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 MARK2Q7KZI7 788 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 KDELC2Q7Z4H8 507 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 AHI1Q8N157 1196 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 PPM1NQ8N819 430 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 PEX13Q92968 403 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 MSANTD3Q96H12 275 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 SHDQ96IW2 340 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 ADGRE3Q9BY15 652 aa21.37■■□□□ 1.01
VPS28-212ENST00000530836 PPANQ9NQ55 473 aaKnown RBP21.37■■□□□ 1.01
VPS28-212ENST00000530836 KRT37O76014 449 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 PAPSS2O95340 614 aaPredicted RBP21.36■■□□□ 1.01
VPS28-212ENST00000530836 ATXN1LP0C7T5 689 aaKnown RBP21.36■■□□□ 1.01
VPS28-212ENST00000530836 GJA4P35212 333 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 RGRP47804 291 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 SOX9P48436 509 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 STARD6P59095 220 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 IHHQ14623 411 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 FUT11Q495W5 492 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 SIRPB2Q5JXA9 342 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 NCEH1Q6PIU2 408 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 EXOC3L1Q86VI1 746 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 RALGPS2Q86X27 583 aaPredicted RBP21.36■■□□□ 1.01
VPS28-212ENST00000530836 SLC25A41Q8N5S1 370 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 MTBPQ96DY7 904 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 TRIB3Q96RU7 358 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 TRIM56Q9BRZ2 755 aaKnown RBP21.36■■□□□ 1.01
VPS28-212ENST00000530836 TDRD1Q9BXT4 1180 aaKnown RBP21.36■■□□□ 1.01
VPS28-212ENST00000530836 CEP44Q9C0F1 390 aa21.36■■□□□ 1.01
VPS28-212ENST00000530836 NSMCE4AQ9NXX6 385 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms