RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 UNQ6494/PRO21346Q6UXR6 183 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CLEC20AQ6ZU45 233 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 GPRIN1Q7Z2K8 1008 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MTERF4Q7Z6M4 381 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 TAX1BP1Q86VP1 789 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TMEM173Q86WV6 379 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 METTL23Q86XA0 190 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CEP57Q86XR8 500 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CILP2Q8IUL8 1156 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 SAMD14Q8IZD0 417 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 OR2C3Q8N628 320 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 UBL4BQ8N7F7 174 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ANKRD52Q8NB46 1076 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 STKLD1Q8NE28 680 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PHOSPHO1Q8TCT1 267 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 BCL7CQ8WUZ0 217 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 SLC35F5Q8WV83 523 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 NRG4Q8WWG1 115 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 LRTOMTQ8WZ04 291 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ATP6V1E2Q96A05 226 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ASIC4Q96FT7 647 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PCED1BQ96HM7 432 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PBKQ96KB5 322 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ASB2Q96Q27 587 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 HNRNPABQ99729 332 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 SMOQ99835 787 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 AP1M1Q9BXS5 423 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 OSBPL1AQ9BXW6 950 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 DUSP16Q9BY84 665 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 DNAI2Q9GZS0 605 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MIS12Q9H081 205 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 RAB6CQ9H0N0 254 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ELAC1Q9H777 363 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 ZWILCHQ9H900 591 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ZFP64Q9NPA5 681 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 DMRT3Q9NQL9 472 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TMEM30AQ9NV96 361 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TMLHEQ9NVH6 421 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MARCH5Q9NX47 278 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MYOTQ9UBF9 498 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CDH9Q9ULB4 789 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PCDHGB3Q9Y5G1 929 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 SNX11Q9Y5W9 270 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 F5P12259 2224 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 KIAA1549LQ6ZVL6 1849 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TICRRQ7Z2Z1 1910 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PLXNB3Q9ULL4 1909 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 DENND4AQ7Z401 1863 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TCRBV7S2A1N4TA0A589 114 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TMEM189-UBE2V1I3L0A0 370 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CES2O00748 559 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 XPO1O14980 1071 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 KIAA0355O15063 1070 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PSTPIP1O43586 416 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 APOL3O95236 402 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PRLP01236 227 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KRT1P04264 644 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 NTRK1P04629 796 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GALTP07902 379 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CELA3BP08861 270 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 MSL3P1P0C860 447 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TYMPP19971 482 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GPD1P21695 349 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PSMA3P25788 255 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 IL1R2P27930 398 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 RFC2P35250 354 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GPR15P49685 360 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 NDUFV1P49821 464 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ARPP19P56211 112 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GSCP56915 257 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 RWDD2BP57060 319 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 WDR5P61964 334 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 SLC6A3Q01959 620 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 MVKQ03426 396 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TAP1Q03518 808 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 YWHAHQ04917 246 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 SMC1AQ14683 1233 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 SMTNL2Q2TAL5 461 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 CTXN3Q4LDR2 81 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SLC39A12Q504Y0 691 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 DGKKQ5KSL6 1271 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SPOUT1Q5T280 376 aaKnown RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 SEL1L2Q5TEA6 688 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 FAM171A1Q5VUB5 890 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SDHAF4Q5VUM1 108 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TXNRD3NBQ6F5E7 133 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KIAA1841Q6NSI8 718 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 FUT10Q6P4F1 479 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 FAM171BQ6P995 826 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PRSS55Q6UWB4 352 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 OLFML1Q6UWY5 402 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 SYDE1Q6ZW31 735 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 OTOP2Q7RTS6 562 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TAS1R1Q7RTX1 841 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 KANSL1Q7Z3B3 1105 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 GPR155Q7Z3F1 870 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 ZNF572Q7Z3I7 529 aaPredicted RBP4.29□□□□□ -1.72
CD44-226ENST00000527889 ANKS1BQ7Z6G8 1248 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 TMEM110Q86TL2 294 aa4.29□□□□□ -1.72
CD44-226ENST00000527889 PIGZQ86VD9 579 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms