RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CHP1Q99653 195 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 HAUS2Q9NVX0 235 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 GGT7Q9UJ14 662 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 ATP8A1Q9Y2Q0 1164 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 TP53BP1Q12888 1972 aaPredicted RBP20.81■□□□□ 0.92
VPS28-206ENST00000526734 ZNF487B1APH4 448 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 RAD51BO15315 384 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 BUB1BO60566 1050 aaPredicted RBP20.8■□□□□ 0.92
VPS28-206ENST00000526734 SOCS5O75159 536 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 C1SP09871 688 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 ATXN1LP0C7T5 689 aaKnown RBP20.8■□□□□ 0.92
VPS28-206ENST00000526734 IL4RP24394 825 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 NFKBIAP25963 317 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 RGRP47804 291 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 HNRNPKP61978 463 aaKnown RBP eCLIP20.8■□□□□ 0.925e-6■□□□□ 11.2
VPS28-206ENST00000526734 YPEL5P62699 121 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 DPYSL3Q14195 570 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 PAFAH1B3Q15102 231 aaKnown RBP20.8■□□□□ 0.92
VPS28-206ENST00000526734 HS1BP3Q53T59 392 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 UNQ6494/PRO21346Q6UXR6 183 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 SLCO6A1Q86UG4 719 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 PARGQ86W56 976 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 VSIG1Q86XK7 387 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 CAMK1DQ8IU85 385 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 CHCHD4Q8N4Q1 142 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 PAF1Q8N7H5 531 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 SLC35G2Q8TBE7 412 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 CNDP2Q96KP4 475 aaKnown RBP20.8■□□□□ 0.92
VPS28-206ENST00000526734 PCDH12Q9NPG4 1184 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 SPTLC3Q9NUV7 552 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 TOR4AQ9NXH8 423 aa20.8■□□□□ 0.92
VPS28-206ENST00000526734 TRPM6Q9BX84 2022 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 SPTY2D1-AS1A0A0U1RR47 76 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 POM121BA6NF01 834 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 H3BM21 787 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 ENC1O14682 589 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 RIOK3O14730 519 aaKnown RBP20.79■□□□□ 0.92
VPS28-206ENST00000526734 PEX11BO96011 259 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 GJC1P36383 396 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 MMP12P39900 470 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 SCNN1BP51168 640 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 PFN3P60673 137 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 SLC10A7Q0GE19 358 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 BNIP3Q12983 259 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 PTK2BQ14289 1009 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 AGERQ15109 404 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 TCEAL1Q15170 157 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 MARC1Q5VT66 337 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 TIGD7Q6NT04 549 aaPredicted RBP20.79■□□□□ 0.92
VPS28-206ENST00000526734 SLC22A18ASQ8N1D0 253 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 GALNT15Q8N3T1 639 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 EID2Q8N6I1 236 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 FATE1Q969F0 183 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 CENPTQ96BT3 561 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 FAF2Q96CS3 445 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 NUDCD1Q96RS6 583 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 MGME1Q9BQP7 344 aa20.79■□□□□ 0.92
VPS28-206ENST00000526734 NEMP2A6NFY4 417 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 MMP20O60882 483 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 TOP3BO95985 862 aaKnown RBP20.78■□□□□ 0.92
VPS28-206ENST00000526734 PROS1P07225 676 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 ALPPL2P10696 532 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 SPINK2P20155 84 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 MX2P20592 715 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 SLC1A1P43005 524 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 THOP1P52888 689 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 GALNT2Q10471 571 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 ILKQ13418 452 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 MESDQ14696 234 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 ANKRD20A8PQ5CZ79 823 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 LRRC73Q5JTD7 316 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 TP53INP2Q8IXH6 220 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 WRAP53Q9BUR4 548 aaKnown RBP20.78■□□□□ 0.92
VPS28-206ENST00000526734 LUC7LQ9NQ29 371 aaKnown RBP20.78■□□□□ 0.92
VPS28-206ENST00000526734 AMACRQ9UHK6 382 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 KLK13Q9UKR3 277 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 CEP295Q9C0D2 2601 aa20.78■□□□□ 0.92
VPS28-206ENST00000526734 TRAFD1O14545 582 aaPredicted RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 MUSKO15146 869 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 PIAS2O75928 621 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 CSF2P04141 144 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 CD48P09326 243 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 NME1P15531 152 aaKnown RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 CR2P20023 1033 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 DGKAP23743 735 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 IGFALSP35858 605 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 GARSP41250 739 aaKnown RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 MMP13P45452 471 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 TAS2R40P59535 323 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 MMRN1Q13201 1228 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 ZNF211Q13398 564 aaPredicted RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 PDE1CQ14123 709 aaPredicted RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 FZD2Q14332 565 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 IFI16Q16666 785 aaKnown RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 ZFYVE27Q5T4F4 411 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 LRRC38Q5VT99 294 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 NCBP2-AS2Q69YL0 99 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 PNPLA1Q8N8W4 532 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 TP53I13Q8NBR0 393 aaPredicted RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 PCDH19Q8TAB3 1148 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms