RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 RRAGCQ9HB90 399 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 SLC17A6Q9P2U8 582 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 C5orf60A6NFR6 353 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 TLR5O60602 858 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 VPS4BO75351 444 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 CTPS1P17812 591 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 CYP2A7P20853 494 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 GPD2P43304 727 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 RALGPS1Q5JS13 557 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 DRICH1Q6PGQ1 229 aaPredicted RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 SYT12Q8IV01 421 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 PTCD3Q96EY7 689 aaKnown RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 QKIQ96PU8 341 aaKnown RBP eCLIP12.76□□□□□ -0.37
USP53-209ENST00000514665 ZNF358Q9NW07 568 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 DTLQ9NZJ0 730 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 SELENONQ9NZV5 590 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 DHRS12A0PJE2 317 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 MANSC4A6NHS7 340 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 NRP2O60462 931 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 MSCO60682 206 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 TIPRLO75663 272 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 IDH2P48735 452 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 ADARP55265 1226 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 RPL38P63173 70 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 MAP2K5Q13163 448 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 GSTA3Q16772 222 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 FSTL4Q6MZW2 842 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ERAP2Q6P179 960 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 AAGABQ6PD74 315 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 OR6K2Q8NGY2 324 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 MTERF3Q96E29 417 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ZNF317Q96PQ6 595 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 CDK5RAP1Q96SZ6 601 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 CIB1Q99828 191 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 EBF4Q9BQW3 602 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 S100A14Q9HCY8 104 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 PRPF19Q9UMS4 504 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 ZNF541Q9H0D2 1346 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 MYBPHLA2RUH7 354 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ULK1O75385 1050 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 WFS1O76024 890 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 IGSF6O95976 241 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ICAM3P32942 547 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 LSM3P62310 102 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 DCTN2Q13561 401 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 MTX3Q5HYI7 312 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 RHBDF2Q6PJF5 856 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ARHGAP36Q6ZRI8 547 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 UNC5BQ8IZJ1 945 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ZNF781Q8N8C0 355 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 BPIFB6Q8NFQ5 453 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 DQX1Q8TE96 717 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 SOCS4Q8WXH5 440 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 PANX3Q96QZ0 392 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ZNF395Q9H8N7 513 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 C6orf203Q9P0P8 240 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 LEF1Q9UJU2 399 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 TNPO3Q9Y5L0 923 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 MAP1BP46821 2468 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 CD3EAPO15446 510 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 TGDSO95455 350 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 HOXC6P09630 235 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 OR56A5P0C7T3 313 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 OCM2P0CE71 109 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 OCMP0CE72 109 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 LILRA4P59901 499 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 MRPL28Q13084 256 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 TP53BP2Q13625 1128 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 HECTD3Q5T447 861 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 ESRP1Q6NXG1 681 aaKnown RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 SLC39A4Q6P5W5 647 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 DET1Q7L5Y6 550 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 SAPCD2Q86UD0 394 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 PHACTR4Q8IZ21 702 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 OR8H2Q8N162 312 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 FAM156AQ8NDB6 213 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 BTN2A2Q8WVV5 523 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 LENG1Q96BZ8 264 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 AGAP2Q99490 1192 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 C2orf49Q9BVC5 232 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 C6orf62Q9GZU0 229 aaPredicted RBP12.75□□□□□ -0.37
USP53-209ENST00000514665 CACNG4Q9UBN1 327 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 PSMD13Q9UNM6 376 aa12.75□□□□□ -0.37
USP53-209ENST00000514665 SLC15A5A6NIM6 579 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 ZBTB14O43829 449 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 MT-ND1P03886 318 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 IMPDH2P12268 514 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 PTPN9P43378 593 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 C21orf59P57076 290 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 INSCQ1MX18 579 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 SLC5A9Q2M3M2 681 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 USP50Q70EL3 339 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 DSELQ8IZU8 1212 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 RDH11Q8TC12 318 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 EPS8L2Q9H6S3 715 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 ZC4H2Q9NQZ6 224 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 DUSP12Q9UNI6 340 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 AKAP12Q02952 1782 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 SDK1Q7Z5N4 2213 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 DPPA5A6NC42 116 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms