RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	LRRC61	Q9BV99	259 aa		11.77	□□□□□ -0.53
VTI1A-208	ENST00000494728	DHX35	Q9H5Z1	703 aa	Known RBP	11.77	□□□□□ -0.53
VTI1A-208	ENST00000494728	CATSPERB	Q9H7T0	1116 aa		11.77	□□□□□ -0.53
VTI1A-208	ENST00000494728	UBA2	Q9UBT2	640 aa	Predicted RBP	11.77	□□□□□ -0.53
VTI1A-208	ENST00000494728	BSN	Q9UPA5	3926 aa		11.77	□□□□□ -0.53
VTI1A-208	ENST00000494728	PMS2P1	A4D2B8	440 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	EEF2K	O00418	725 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	AQP9	O43315	295 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	OPA1	O60313	960 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	MT-CO3	P00414	261 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CDK4	P11802	303 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	C6	P13671	934 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	ERCC2	P18074	760 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	TNFAIP3	P21580	790 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	IL1R2	P27930	398 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	MMP12	P39900	470 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	PAPOLA	P51003	745 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	COL9A2	Q14055	689 aa	Predicted RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	HGSNAT	Q68CP4	663 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CRTC1	Q6UUV9	634 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	RFX8	Q6ZV50	586 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	DCP2	Q8IU60	420 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CAMK1D	Q8IU85	385 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	PHACTR4	Q8IZ21	702 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	FAM181A	Q8N9Y4	354 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	TSEN2	Q8NCE0	465 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	FAM174A	Q8TBP5	190 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	LMX1A	Q8TE12	382 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CASKIN2	Q8WXE0	1202 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	ZNF653	Q96CK0	615 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	VCPIP1	Q96JH7	1222 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CLPB	Q9H078	707 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	PCDH12	Q9NPG4	1184 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	PARVA	Q9NVD7	372 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	ETNK2	Q9NVF9	386 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	AIPL1	Q9NZN9	384 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	DKK3	Q9UBP4	350 aa		11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	CNOT8	Q9UFF9	292 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728	APOBEC3B	Q9UH17	382 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-208	ENST00000494728		A0A1W2PQC6	194 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	TTC24	A2A3L6	582 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	TM7SF2	O76062	418 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	FTL	P02792	175 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	GM2A	P17900	193 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	TGM2	P21980	687 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	EIF2S3	P41091	472 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	ZNF165	P49910	485 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	NDST2	P52849	883 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	PDX1	P52945	283 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	RALGDS	Q12967	914 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	DPYS	Q14117	519 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	CDKN3	Q16667	212 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	UGP2	Q16851	508 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	SMTNL2	Q2TAL5	461 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	WSCD2	Q2TBF2	565 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	TMEM52B	Q4KMG9	183 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	PERM1	Q5SV97	790 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	ERMARD	Q5T6L9	678 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	TXNRD3NB	Q6F5E7	133 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	ZCCHC8	Q6NZY4	707 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	MACC1	Q6ZN28	852 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	ZSCAN30	Q86W11	494 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	CPNE8	Q86YQ8	564 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	SLC35F3	Q8IY50	421 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	PELI3	Q8N2H9	469 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	IFI44	Q8TCB0	444 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	CXorf40A	Q8TE69	158 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	ARHGEF26	Q96DR7	871 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	NCAPG	Q9BPX3	1015 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	CPEB1	Q9BZB8	566 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	NRSN2	Q9GZP1	204 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	CWC15	Q9P013	229 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728	AK5	Q9Y6K8	562 aa		11.75	□□□□□ -0.53
VTI1A-208	ENST00000494728		H3BM21	787 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	DFFA	O00273	331 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	RIOK3	O14730	519 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	CS	O75390	466 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	PEX11B	O96011	259 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	MPO	P05164	745 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	ALPPL2	P10696	532 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	GZMA	P12544	262 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	HTR7	P34969	479 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	PBX1	P40424	430 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	THOP1	P52888	689 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	NR1I3	Q14994	352 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	ALG11	Q2TAA5	492 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	PRRT3	Q5FWE3	981 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	CACTIN-AS1	Q8N1I8	211 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	PLA2G15	Q8NCC3	412 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	SNIP1	Q8TAD8	396 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	FNIP1	Q8TF40	1166 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	TSACC	Q96A04	125 aa	Predicted RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	PDXP	Q96GD0	296 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	BTBD6	Q96KE9	485 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	BOC	Q9BWV1	1114 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	NAT10	Q9H0A0	1025 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	SUV39H2	Q9H5I1	410 aa		11.74	□□□□□ -0.53

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