RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	DAAM2	Q86T65	1068 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	FAM131B	Q86XD5	332 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	TMEM139	Q8IV31	216 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	MAP7D3	Q8IWC1	876 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	FAM217A	Q8IXS0	508 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	AHI1	Q8N157	1196 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	RNF10	Q8N5U6	811 aa	Known RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	KIAA1524	Q8TCG1	905 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	WFIKKN2	Q8TEU8	576 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	UBE2Q2	Q8WVN8	375 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	CENPI	Q92674	756 aa	Predicted RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	NT5C3B	Q969T7	300 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	C1orf74	Q96LT6	269 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	HAPLN3	Q96S86	360 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	ELF4	Q99607	663 aa	Predicted RBP	8.92	□□□□□ -0.98
USP4-213	ENST00000488520	EBF2	Q9HAK2	575 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	SGK2	Q9HBY8	427 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	LZTFL1	Q9NQ48	299 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	FBXL12	Q9NXK8	326 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	DONSON	Q9NYP3	566 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	SERGEF	Q9UGK8	458 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	SUN2	Q9UH99	717 aa		8.92	□□□□□ -0.98
USP4-213	ENST00000488520	COL27A1	Q8IZC6	1860 aa	Predicted RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	GOLGA6L7	A0A1B0GV03	622 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520		A0A1W2PP55	124 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520		A0A1W2PPC4	97 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	TCRBV5S1A1T	A0A578	114 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	GOLGA6L9	A6NEM1	432 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	BTNL10	A8MVZ5	291 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	MID1	O15344	667 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	DFNA5	O60443	496 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	TBL1X	O60907	577 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PROSC	O94903	275 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ATP5B	P06576	529 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	KRT7	P08729	469 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	DLD	P09622	509 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	TNNT1	P13805	278 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	CD38	P28907	300 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	NUMB	P49757	651 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ARSD	P51689	593 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	RACK1	P63244	317 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	CCZ1B	P86790	482 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	CCZ1	P86791	482 aa	Predicted RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	KRT81	Q14533	505 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	TCEAL1	Q15170	157 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	SHB	Q15464	509 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF776	Q68DI1	518 aa	Predicted RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	CHSY1	Q86X52	802 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF843	Q8N446	348 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF557	Q8N988	423 aa	Predicted RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	KCTD6	Q8NC69	237 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	SLC39A13	Q96H72	371 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	NAF1	Q96HR8	494 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	FCRL2	Q96LA5	508 aa	Predicted RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ALS2CR12	Q96Q35	445 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	MAK16	Q9BXY0	300 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	NEUROG2	Q9H2A3	272 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PABPC3	Q9H361	631 aa	Known RBP	8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ZWILCH	Q9H900	591 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PIGV	Q9NUD9	493 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	OR12D3	Q9UGF7	316 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	AMFR	Q9UKV5	643 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	NENF	Q9UMX5	172 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PPP2R2C	Q9Y2T4	447 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PCDHGA1	Q9Y5H4	931 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	LRRK1	Q38SD2	2015 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	PIEZO2	Q9H5I5	2752 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	CHD5	Q8TDI0	1954 aa		8.91	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	BRINP1	O60477	761 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	PAGE1	O75459	146 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RNASEH2A	O75792	299 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	MTA2	O94776	668 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	IGLV3-25	P01717	112 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	TACR2	P21452	398 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	MIP	P30301	263 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	MAN1A1	P33908	653 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	GJC1	P36383	396 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ADH7	P40394	386 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ARL4A	P40617	200 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ACADVL	P49748	655 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF135	P52742	658 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	HADHB	P55084	474 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ST8SIA6	P61647	398 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	CXADR	P78310	365 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	PITX1	P78337	314 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ZBTB16	Q05516	673 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	ZNF177	Q13360	481 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RAP1GAP2	Q684P5	730 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RWDD4	Q6NW29	188 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	FBXL19	Q6PCT2	694 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	GPR155	Q7Z3F1	870 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	PSTK	Q8IV42	348 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	MMAA	Q8IVH4	418 aa	Known RBP	8.9	□□□□□ -0.98
USP4-213	ENST00000488520	RHOT1	Q8IXI2	618 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	LGI2	Q8N0V4	545 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	UBL4B	Q8N7F7	174 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	NIPA2	Q8N8Q9	360 aa		8.9	□□□□□ -0.98
USP4-213	ENST00000488520	SAP25	Q8TEE9	199 aa		8.9	□□□□□ -0.98

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms