RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 VIMP08670 466 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 CEBPBP17676 345 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 PDE1BQ01064 536 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 PDE1CQ14123 709 aaPredicted RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 SEPT6Q14141 434 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 SEPT7Q16181 437 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 UGP2Q16851 508 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 NEPROQ6NW34 567 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 KIAA0408Q6ZU52 694 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 GALNT7Q86SF2 657 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 SRLQ86TD4 932 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 ARID3BQ8IVW6 561 aaPredicted RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 ADGRG2Q8IZP9 1017 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 SPOCK2Q92563 424 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 BHMTQ93088 406 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 EXOC2Q96KP1 924 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 GPR22Q99680 433 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 PAIP2Q9BPZ3 127 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 FAM167BQ9BTA0 163 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 LINC00597Q9H2U6 94 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 C12orf65Q9H3J6 166 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 MARK1Q9P0L2 795 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 DCDC2Q9UHG0 476 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 GGT7Q9UJ14 662 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 MTO1Q9Y2Z2 717 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 MRPS23Q9Y3D9 190 aaKnown RBP14.15□□□□□ -0.14
CLK3-204ENST00000483723 RAI2Q9Y5P3 530 aa14.15□□□□□ -0.14
CLK3-204ENST00000483723 MYOFQ9NZM1 2061 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 GOLGA8TH3BQL2 631 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 THOC5Q13769 683 aaKnown RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 GALNT3Q14435 633 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 SMAD1Q15797 465 aaKnown RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 KIAA0907Q7Z7F0 614 aaPredicted RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 LMNTD2Q8IXW0 634 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 ZNF557Q8N988 423 aaPredicted RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 TTC16Q8NEE8 873 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 ITFG1Q8TB96 612 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 CALML6Q8TD86 181 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 STYXQ8WUJ0 223 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 SMG7Q92540 1137 aaKnown RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 ZNF75CPQ92670 426 aaPredicted RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 VPS39Q96JC1 886 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 CABS1Q96KC9 395 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 FAM111AQ96PZ2 611 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 GDF15Q99988 308 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 NKX2-4Q9H2Z4 354 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 MFSD1Q9H3U5 465 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 CERS4Q9HA82 394 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 SPHK2Q9NRA0 654 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLK3-204ENST00000483723 FBXO5Q9UKT4 447 aa14.14□□□□□ -0.15
CLK3-204ENST00000483723 FCF1Q9Y324 198 aaKnown RBP14.14□□□□□ -0.15
CLK3-204ENST00000483723 SMAD6O43541 496 aaKnown RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 GLRA3O75311 464 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 ZNF821O75541 412 aaPredicted RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 MPOP05164 745 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 PDHA1P08559 390 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 TYK2P29597 1187 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 HLA-FP30511 346 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 SERPINB8P50452 374 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 RHOAP61586 193 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 AP1S1P61966 158 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 TRAF2Q12933 501 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 RAB30Q15771 203 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 PITRM1Q5JRX3 1037 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 ASTLQ6HA08 431 aaPredicted RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 KYAT3Q6YP21 454 aaKnown RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 DENND6AQ8IWF6 608 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 C12orf76Q8N812 135 aaPredicted RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 VN1R2Q8NFZ6 395 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 PTPRN2Q92932 1015 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 SEC16BQ96JE7 1060 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 CDCA3Q99618 268 aaPredicted RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 SLC13A1Q9BZW2 595 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 FAM107BQ9H098 131 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 NSRP1Q9H0G5 558 aaKnown RBP14.13□□□□□ -0.15
CLK3-204ENST00000483723 PIDD1Q9HB75 910 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 SNX15Q9NRS6 342 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 PCMTD2Q9NV79 361 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 KCTD3Q9Y597 815 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 PCDHGC4Q9Y5F7 938 aa14.13□□□□□ -0.15
CLK3-204ENST00000483723 ANKRD66B4E2M5 251 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 K7ERQ8 282 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 EBAG9O00559 213 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 SLC9A3R1O14745 358 aaPredicted RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 GSTA1P08263 222 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 LEPRP48357 1165 aaKnown RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 NRIP1P48552 1158 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 SERPINB4P48594 390 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 ARSDP51689 593 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 HNRNPH2P55795 449 aaKnown RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 CTBP1Q13363 440 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 DMC1Q14565 340 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 CBX2Q14781 532 aaPredicted RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 GRM3Q14832 879 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 TAF1AQ15573 450 aaPredicted RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 GKAP1Q5VSY0 366 aaPredicted RBP14.12□□□□□ -0.15
CLK3-204ENST00000483723 C6orf89Q6UWU4 347 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 CLEC14AQ86T13 490 aa14.12□□□□□ -0.15
CLK3-204ENST00000483723 RNF135Q8IUD6 432 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms