RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 B8ZZF3 427 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 GJB6O95452 261 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 TNFP01375 233 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 ITGA2BP08514 1039 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 C6P13671 934 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 GPD1P21695 349 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 HDAC4P56524 1084 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 UGP2Q16851 508 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 DPCR1Q3MIW9 517 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 PERM1Q5SV97 790 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 TPRG1LQ5T0D9 272 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 BRAT1Q6PJG6 821 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 ENPP7Q6UWV6 458 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 XKR5Q6UX68 686 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 DNAAF5Q86Y56 855 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 FBXO39Q8N4B4 442 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 PAF1Q8N7H5 531 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 RTL3Q8N8U3 475 aaKnown RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 TP53I13Q8NBR0 393 aaPredicted RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 ANKRD20A12PQ8NF67 263 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 JOSD2Q8TAC2 188 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 SLC20A1Q8WUM9 679 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 HMCESQ96FZ2 354 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 PCMTD1Q96MG8 357 aaPredicted RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 TMEM74Q96NL1 305 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 CCNL2Q96S94 520 aaPredicted RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 EDEM3Q9BZQ6 932 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 VPS16Q9H269 839 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 TCEAL2Q9H3H9 227 aaPredicted RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 SUV39H2Q9H5I1 410 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 NOCTQ9UK39 431 aaKnown RBP13.43□□□□□ -0.26
HMGB3-204ENST00000448905 GPR34Q9UPC5 381 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 GTF3C3Q9Y5Q9 886 aa13.43□□□□□ -0.26
HMGB3-204ENST00000448905 NYNRINQ9P2P1 1898 aaKnown RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SIGLEC16A6NMB1 481 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CDRT15L2A8MXV6 281 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 PLD2O14939 933 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CREB3O43889 395 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CCDC172P0C7W6 258 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 KELP23276 732 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 HTR7P34969 479 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 IGFALSP35858 605 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SRP54P61011 504 aaKnown RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 POLR2LP62875 67 aaKnown RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 FMO1Q01740 532 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SERINC3Q13530 473 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 INPP5AQ14642 412 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 ZSCAN23Q3MJ62 389 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 WDR59Q6PJI9 974 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 PCSK4Q6UW60 755 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 RAB11FIP2Q7L804 512 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CLEC14AQ86T13 490 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CCDC185Q8N715 623 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 TSACCQ96A04 125 aaPredicted RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 TMEM159Q96B96 161 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 MED8Q96G25 268 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 LIN37Q96GY3 246 aaPredicted RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 PRR11Q96HE9 360 aaPredicted RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 APOOQ9BUR5 198 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 CLPBQ9H078 707 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 NLRC4Q9NPP4 1024 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 FAM207AQ9NSI2 230 aaPredicted RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SEPT11Q9NVA2 429 aaKnown RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 TAB2Q9NYJ8 693 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SEPT10Q9P0V9 454 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 SIRPGQ9P1W8 387 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 UBA2Q9UBT2 640 aaPredicted RBP13.42□□□□□ -0.26
HMGB3-204ENST00000448905 PCDHGA7Q9Y5G6 932 aa13.42□□□□□ -0.26
HMGB3-204ENST00000448905 TDRD6O60522 2096 aaKnown RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 CFAP69A5D8W1 941 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 WASH4PA8MWX3 477 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 RASA4BC9J798 803 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 PDE2AO00408 941 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 NTN3O00634 580 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 FGF10O15520 208 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 ZW10O43264 779 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 RASA4O43374 803 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 JMJD7P0C870 316 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 UNGP13051 313 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 CHRNB2P17787 502 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 ITIH2P19823 946 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 LIG3P49916 1009 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 ZNF143P52747 638 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 INHBCP55103 352 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 SKOR1P84550 965 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 NFATC4Q14934 902 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 IRF4Q15306 451 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 WSCD2Q2TBF2 565 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 RAB6CQ53S08 254 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 LRRC73Q5JTD7 316 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 DCUN1D2Q6PH85 259 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 PHF13Q86YI8 300 aaPredicted RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 JAMLQ86YT9 394 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 UMODL1-AS1Q8N2C9 162 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 C3orf20Q8ND61 904 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 NEK11Q8NG66 645 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 ENOX1Q8TC92 643 aaKnown RBP13.41□□□□□ -0.26
HMGB3-204ENST00000448905 COL26A1Q96A83 441 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 TUBGCP5Q96RT8 1024 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms