RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 CDC6Q99741 560 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 WRAP53Q9BUR4 548 aaKnown RBP12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ATP13A3Q9H7F0 1226 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 PCDH12Q9NPG4 1184 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ANGPTL2Q9UKU9 493 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 PCDHA13Q9Y5I0 950 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 A6NNZ2 444 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 TRAFD1O14545 582 aaPredicted RBP12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 YKT6O15498 198 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 TM7SF2O76062 418 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 MAP3K6O95382 1288 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 PRKCGP05129 697 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 CR2P20023 1033 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 EPHA8P29322 1005 aaPredicted RBP12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 GARSP41250 739 aaKnown RBP12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 MMP13P45452 471 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 AP1S1P61966 158 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 SEMG2Q02383 582 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 GALNT2Q10471 571 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 SLC10A2Q12908 348 aaPredicted RBP12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 ZNF235Q14590 738 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 CFAP58Q5T655 872 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 MARC1Q5VT66 337 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 KDM7AQ6ZMT4 941 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 KANSL1Q7Z3B3 1105 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 LRRC49Q8IUZ0 686 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 SLC22A18ASQ8N1D0 253 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 OXR1Q8N573 874 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 PNPLA1Q8N8W4 532 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 CXorf40AQ8TE69 158 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 NSMCE1Q8WV22 266 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 ECHDC3Q96DC8 303 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 RNF157Q96PX1 679 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 PANX2Q96RD6 677 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 NUDCD1Q96RS6 583 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 CAAP1Q9H8G2 361 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 TFR2Q9UP52 801 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 HYOU1Q9Y4L1 999 aa12.85□□□□□ -0.35
PRPF40A-203ENST00000448428 COL5A1P20908 1838 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 LRRD1A4D1F6 860 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 C3orf70A6NLC5 250 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 FPGTO14772 594 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SDC3O75056 442 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 ATXN1LP0C7T5 689 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 FTH1P19P0C7X4 201 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SPINK2P20155 84 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 COMTP21964 271 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 HSPA9P38646 679 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SLC1A1P43005 524 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 NOP2P46087 812 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 MAXP61244 160 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 GBE1Q04446 702 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 ELP6Q0PNE2 266 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SPA17Q15506 151 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 IFI16Q16666 785 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 LRRC38Q5VT99 294 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 KYAT3Q6YP21 454 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 PTAR1Q7Z6K3 402 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 DCP2Q8IU60 420 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SLC25A45Q8N413 288 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 TEX26Q8N6G2 289 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 EID2Q8N6I1 236 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 LRRN4Q8WUT4 740 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 TSGA13Q96PP4 275 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 MGME1Q9BQP7 344 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 NOD2Q9HC29 1040 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 NT5MQ9NPB1 228 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 SCUBE2Q9NQ36 999 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 MBNL1Q9NR56 388 aaKnown RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 GPR27Q9NS67 375 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 TOR4AQ9NXH8 423 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 ATP8A1Q9Y2Q0 1164 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 COQ6Q9Y2Z9 468 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 PCDHGC4Q9Y5F7 938 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 EPN1Q9Y6I3 576 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 ARID1BQ8NFD5 2236 aaPredicted RBP12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 NCOR2Q9Y618 2525 aa12.84□□□□□ -0.35
PRPF40A-203ENST00000448428 PTPRBP23467 1997 aa12.83□□□□□ -0.35
PRPF40A-203ENST00000448428 SOWAHDA6NJG2 315 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 ZNF487B1APH4 448 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 MATN3O15232 486 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 TNFSF14O43557 240 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 HYAL3O43820 417 aaPredicted RBP12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 TNNT1P13805 278 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 FECHP22830 423 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 CCNCP24863 283 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 CYLC1P35663 651 aaPredicted RBP12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 MMP12P39900 470 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 RABIFP47224 123 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 LIG3P49916 1009 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 HADHBP55084 474 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 PFN3P60673 137 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 POLR2LP62875 67 aaKnown RBP12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 FZD2Q14332 565 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 INAVAQ3KP66 663 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 ZNF542PQ5EBM4 170 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 TPRG1LQ5T0D9 272 aa12.83□□□□□ -0.36
PRPF40A-203ENST00000448428 ERAP2Q6P179 960 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms