RNA–Protein interactions for RNA: ENST00000444677.5

GARNL3-208, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-208	ENST00000444677	HNRNPA2B1	P22626	353 aa	Known RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	XPA	P23025	273 aa	Predicted RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	AKT2	P31751	481 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	NUDT1	P36639	197 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	MMP13	P45452	471 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	RENBP	P51606	427 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	ADCY2	Q08462	1091 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	TMEM52B	Q4KMG9	183 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	TPRG1L	Q5T0D9	272 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	SLC9A4	Q6AI14	798 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	KIAA1161	Q6NSJ0	714 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	GATAD2A	Q86YP4	633 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	TEX26	Q8N6G2	289 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	CCNY	Q8ND76	341 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	MAML1	Q92585	1016 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	KLHDC7B	Q96G42	594 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	ZNF641	Q96N77	438 aa	Predicted RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	NUDCD1	Q96RS6	583 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	LGMN	Q99538	433 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	ELF4	Q99607	663 aa	Predicted RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	MGME1	Q9BQP7	344 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	ATP13A3	Q9H7F0	1226 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	SCUBE2	Q9NQ36	999 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	MBNL1	Q9NR56	388 aa	Known RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	DDX56	Q9NY93	547 aa	Known RBP	13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	HEY1	Q9Y5J3	304 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	NCOR2	Q9Y618	2525 aa		13.65	□□□□□ -0.22
GARNL3-208	ENST00000444677	TMEM131	Q92545	1883 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677		A0A1B0GTQ1	180 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	GOLGA8CP	A6NN73	597 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677		A8MX80	341 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	RIOK3	O14730	519 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	APOL1	O14791	398 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	CCNC	P24863	283 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SERPINA4	P29622	427 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	CDKN2B	P42772	138 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	VAV2	P52735	878 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	AP1S1	P61966	158 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	ITK	Q08881	620 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	NIPAL4	Q0D2K0	466 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	TRAF2	Q12933	501 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SGCG	Q13326	291 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SLC14A1	Q13336	389 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	HNRNPD	Q14103	355 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	IFI16	Q16666	785 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SLC45A4	Q5BKX6	768 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	KAZN	Q674X7	775 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	C11orf63	Q6NUN7	778 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SPOCD1	Q6ZMY3	1216 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	DBX2	Q6ZNG2	339 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	LRRC49	Q8IUZ0	686 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	NAXD	Q8IW45	347 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	HCAR2	Q8TDS4	363 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	CXorf40A	Q8TE69	158 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SETD7	Q8WTS6	366 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	NSMCE1	Q8WV22	266 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SKA1	Q96BD8	255 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	ECHDC3	Q96DC8	303 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	TSGA13	Q96PP4	275 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SMIM14	Q96QK8	99 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	ANP32E	Q9BTT0	268 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	MAK16	Q9BXY0	300 aa	Known RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	GDF3	Q9NR23	364 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	SAE1	Q9UBE0	346 aa	Predicted RBP	13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677	HS3ST3A1	Q9Y663	406 aa		13.64	□□□□□ -0.23
GARNL3-208	ENST00000444677		A0A0U1RQS6	177 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ZNF487	B1APH4	448 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	KCNK1	O00180	336 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	PJA2	O43164	708 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	HTRA2	O43464	458 aa	Predicted RBP	13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	PSTPIP1	O43586	416 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CBFA2T3	O75081	653 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	TOP3B	O95985	862 aa	Known RBP	13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	JCHAIN	P01591	159 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	HLA-DQB2	P05538	268 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ZNF883	P0CG24	379 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CEACAM1	P13688	526 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CCT8	P50990	548 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	NAP1L1	P55209	391 aa	Known RBP	13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	DSC2	Q02487	901 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ZBTB17	Q13105	803 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	GRM3	Q14832	879 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	TAZ	Q16635	292 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ZNF542P	Q5EBM4	170 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CFAP58	Q5T655	872 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	BRAT1	Q6PJG6	821 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677		Q6ZSR6	202 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ABI3BP	Q7Z7G0	1075 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	DAAM2	Q86T65	1068 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	IQCH	Q86VS3	1027 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CCDC13	Q8IYE1	715 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	SLC22A18AS	Q8N1D0	253 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	BBS5	Q8N3I7	341 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	ARRDC2	Q8TBH0	407 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	RHBDD1	Q8TEB9	315 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CENPT	Q96BT3	561 aa		13.63	□□□□□ -0.23
GARNL3-208	ENST00000444677	CNTNAP3B	Q96NU0	1288 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms