RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ZNF470Q6ECI4 717 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 C16orf59Q7L2K0 433 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 TMC7Q7Z402 723 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 CEP97Q8IW35 865 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 ARHGAP12Q8IWW6 846 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 FSTL5Q8N475 847 aaPredicted RBP10.77□□□□□ -0.68
CUX1-205ENST00000425244 AUTS2Q8WXX7 1259 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 ELMO2Q96JJ3 720 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 SEPT5Q99719 369 aaPredicted RBP10.77□□□□□ -0.68
CUX1-205ENST00000425244 CSNK1G1Q9HCP0 422 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 POMPQ9Y244 141 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 ACOT9Q9Y305 439 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 FIS1Q9Y3D6 152 aa10.77□□□□□ -0.68
CUX1-205ENST00000425244 FAM95CA0A1B0GW59 222 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ENO4A6NNW6 628 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 TMEM189-UBE2V1I3L0A0 370 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 HDAC3O15379 428 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CFLARO15519 480 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 H2AFYO75367 372 aaKnown RBP10.77□□□□□ -0.69
CUX1-205ENST00000425244 ANXA9O76027 345 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 HLA-DQB2P05538 268 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 APOA4P06727 396 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 SBK3P0C264 359 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ZCCHC18P0CG32 403 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 RFC2P35250 354 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 SLC5A3P53794 718 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MGAT5BQ3V5L5 792 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ZNF280DQ6N043 979 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 DHDDSQ86SQ9 333 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 RNF135Q8IUD6 432 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CENPLQ8N0S6 344 aaPredicted RBP10.77□□□□□ -0.69
CUX1-205ENST00000425244 PNPLA1Q8N8W4 532 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 IRGQQ8WZA9 623 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CASP10Q92851 521 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 NXNL1Q96CM4 212 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CATSPER2Q96P56 530 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 TTPALQ9BTX7 342 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 C1QTNF1Q9BXJ1 281 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CWH43Q9H720 699 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 NSMCE4AQ9NXX6 385 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 RAP2CQ9Y3L5 183 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 PDE4DIPQ5VU43 2346 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MYO7AQ13402 2215 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MATN2O00339 956 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ADAM12O43184 909 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 IRAK2O43187 625 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 PSMD3O43242 534 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MAP3K13O43283 966 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 OAZ2O95190 189 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 JUNP05412 331 aaKnown RBP10.77□□□□□ -0.69
CUX1-205ENST00000425244 STMN1P16949 149 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 TFEBP19484 476 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 PIK3R1P27986 724 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 CCR1P32246 355 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 SLC1A2P43004 574 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ZNF135P52742 658 aaPredicted RBP10.77□□□□□ -0.69
CUX1-205ENST00000425244 ITKQ08881 620 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 LSM12Q3MHD2 195 aaKnown RBP10.77□□□□□ -0.69
CUX1-205ENST00000425244 LRRC8EQ6NSJ5 796 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ZNF354CQ86Y25 554 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MFSD6LQ8IWD5 586 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 FBXW8Q8N3Y1 598 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 TMEM169Q96HH4 297 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 NDNQ99608 321 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 MCMBPQ9BTE3 642 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 DRC3Q9H069 523 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 OSBPL2Q9H1P3 480 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ZDHHC2Q9UIJ5 367 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 ANKRD6Q9Y2G4 727 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 PCDHGA4Q9Y5G9 962 aa10.77□□□□□ -0.69
CUX1-205ENST00000425244 PRUNE2Q8WUY3 3088 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 TMEM233B4DJY2 109 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 AP3B1O00203 1094 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 SYN3O14994 580 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 DLX3O60479 287 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 MAFKO60675 156 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 FGBP02675 491 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 PYGLP06737 847 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 CCNCP24863 283 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 MSX2P35548 267 aaPredicted RBP10.76□□□□□ -0.69
CUX1-205ENST00000425244 HADHAP40939 763 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 ATXN3P54252 364 aaPredicted RBP10.76□□□□□ -0.69
CUX1-205ENST00000425244 SLC12A2P55011 1212 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 RAB10P61026 200 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 TRIP10Q15642 601 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 MAPRE1Q15691 268 aaKnown RBP10.76□□□□□ -0.69
CUX1-205ENST00000425244 UGP2Q16851 508 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 RNF220Q5VTB9 566 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 RNF19BQ6ZMZ0 732 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 ACAD11Q709F0 780 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 TFAP2DQ7Z6R9 452 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 DCP1BQ8IZD4 617 aaKnown RBP10.76□□□□□ -0.69
CUX1-205ENST00000425244 DPF3Q92784 378 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 IGSF21Q96ID5 467 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 FCRL5Q96RD9 977 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 PKMYT1Q99640 499 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 CATSPERBQ9H7T0 1116 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 IL23AQ9NPF7 189 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 NEU3Q9UQ49 428 aa10.76□□□□□ -0.69
CUX1-205ENST00000425244 AURKAO14965 403 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms