RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KLHL30Q0D2K2 578 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 C15orf59Q2T9L4 293 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 SLC25A52Q3SY17 297 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 HGSNATQ68CP4 663 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 WDR59Q6PJI9 974 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 PCDH20Q8N6Y1 951 aaKnown RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 KYQ8NBH2 561 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 SNRNP27Q8WVK2 155 aaKnown RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 CENPTQ96BT3 561 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 PGAP3Q96FM1 320 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 FEM1CQ96JP0 617 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 KLHL32Q96NJ5 620 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC3Q9BQI4 270 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 WRAP53Q9BUR4 548 aaKnown RBP13.08□□□□□ -0.32
LINC00339-202ENST00000416769 KLC2Q9H0B6 622 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 HAUS4Q9H6D7 363 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 DNAI1Q9UI46 699 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 COQ6Q9Y2Z9 468 aa13.08□□□□□ -0.32
LINC00339-202ENST00000416769 ANKRD36A6QL64 1941 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 H3BM21 787 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 AREL1O15033 823 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 YY2O15391 372 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 INSIG1O15503 277 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 AP1G1O43747 822 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 SKILP12757 684 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 TNFAIP3P21580 790 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 UCNP55089 124 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 CDR2Q01850 454 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 SGCGQ13326 291 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 CDO1Q16878 200 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 LINC00303Q3SY05 128 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 C6orf132Q5T0Z8 1188 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 MANEALQ5VSG8 457 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 E4F1Q66K89 784 aaPredicted RBP13.07□□□□□ -0.32
LINC00339-202ENST00000416769 RETSATQ6NUM9 610 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 IGF2-ASQ6U949 168 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 LRRC31Q6UY01 552 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 NOP9Q86U38 636 aaKnown RBP13.07□□□□□ -0.32
LINC00339-202ENST00000416769 PCDH19Q8TAB3 1148 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 EPS8L1Q8TE68 723 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 C1orf74Q96LT6 269 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 IL12RB2Q99665 862 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 AGPAT1Q99943 283 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 DPH1Q9BZG8 443 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 ZYG11BQ9C0D3 744 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 CEP44Q9C0F1 390 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 USP29Q9HBJ7 922 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 METTL5Q9NRN9 209 aaKnown RBP13.07□□□□□ -0.32
LINC00339-202ENST00000416769 SALL4Q9UJQ4 1053 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 TMEM59LQ9UK28 342 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 NOCTQ9UK39 431 aaKnown RBP13.07□□□□□ -0.32
LINC00339-202ENST00000416769 STAP1Q9ULZ2 295 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 CSNK1G3Q9Y6M4 447 aa13.07□□□□□ -0.32
LINC00339-202ENST00000416769 DOPEY2Q9Y3R5 2298 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 A0A1W2PQM1 296 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 SSU72P8A0A1W2PR75 194 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 NEMP1O14524 444 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 PRKCGP05129 697 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 CHRNB2P17787 502 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 WT1P19544 449 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 FECHP22830 423 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 CDH5P33151 784 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 GABRB2P47870 512 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 IRF4Q15306 451 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 ZNF805Q5CZA5 627 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 NAA35Q5VZE5 725 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 CLEC14AQ86T13 490 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 NLRP14Q86W24 1093 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 DCP2Q8IU60 420 aaKnown RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 SDR16C5Q8N3Y7 309 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 TP53I13Q8NBR0 393 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 JOSD2Q8TAC2 188 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 SLC20A1Q8WUM9 679 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 CPA5Q8WXQ8 436 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 ARHGEF2Q92974 986 aaKnown RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 TSACCQ96A04 125 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 CCDC74AQ96AQ1 378 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 C18orf8Q96DM3 657 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 MED8Q96G25 268 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 WBP1Q96G27 269 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 LENG8Q96PV6 779 aaPredicted RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 SYT11Q9BT88 431 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 NOL6Q9H6R4 1146 aaKnown RBP13.06□□□□□ -0.32
LINC00339-202ENST00000416769 EPB41L5Q9HCM4 733 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 SPASTQ9UBP0 616 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 GULP1Q9UBP9 304 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 PADI4Q9UM07 663 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 PCDHGA8Q9Y5G5 932 aa13.06□□□□□ -0.32
LINC00339-202ENST00000416769 ARHGEF17Q96PE2 2063 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 LMO7DNF2Z398 122 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 NTN3O00634 580 aaPredicted RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 TPP1O14773 563 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 TSPAN6O43657 245 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 NOBOXO60393 691 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 MMEP08473 750 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 SLC5A2P31639 672 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 EIF4A3P38919 411 aaKnown RBP13.05□□□□□ -0.32
LINC00339-202ENST00000416769 THOP1P52888 689 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 CCL7P80098 99 aa13.05□□□□□ -0.32
LINC00339-202ENST00000416769 FMO1Q01740 532 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms