RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PCDH12Q9NPG4 1184 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 DAAM1Q9Y4D1 1078 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 ENTPD2Q9Y5L3 495 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 CHD5Q8TDI0 1954 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 KNTC1P50748 2209 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 FASNP49327 2511 aaKnown RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 CXorf51AA0A1B0GTR3 108 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 TTC24A2A3L6 582 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 EME2A4GXA9 379 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 ANKRD62A6NC57 917 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ZSCAN5CA6NGD5 496 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 WASH4PA8MWX3 477 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 A8MX80 341 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PCCBP05166 539 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 C6P13671 934 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 LSSP48449 732 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PAPOLAP51003 745 aaKnown RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 PCBP4P57723 403 aaKnown RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 YBEYP58557 167 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 TPI1P60174 286 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PPARDQ03181 441 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PTK2BQ14289 1009 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 INPP5AQ14642 412 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 STX1AQ16623 288 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ALG11Q2TAA5 492 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 TMEM52BQ4KMG9 183 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 INO80DQ53TQ3 878 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 ARHGAP40Q5TG30 622 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PCSK4Q6UW60 755 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ENPP7Q6UWV6 458 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 MACC1Q6ZN28 852 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 CLEC17AQ6ZS10 378 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 IRF2BP2Q7Z5L9 587 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 SFTPA2Q8IWL1 248 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 UMODL1-AS1Q8N2C9 162 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ARFGAP1Q8N6T3 406 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 KYQ8NBH2 561 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PLA2G15Q8NCC3 412 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 BTN2A2Q8WVV5 523 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 FUBP1Q96AE4 644 aaKnown RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 ARHGEF26Q96DR7 871 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 HIC2Q96JB3 615 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 VCPIP1Q96JH7 1222 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 NSMCE3Q96MG7 304 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ERGIC2Q96RQ1 377 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 KCTD15Q96SI1 283 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 BOCQ9BWV1 1114 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 SLC13A1Q9BZW2 595 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 SUV39H2Q9H5I1 410 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 DHX35Q9H5Z1 703 aaKnown RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 RETREG1Q9H6L5 497 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 LRRC19Q9H756 370 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 CATSPERBQ9H7T0 1116 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 PDFQ9HBH1 243 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ASCL3Q9NQ33 180 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 ANO10Q9NW15 660 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 RABGEF1Q9UJ41 708 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 SALL4Q9UJQ4 1053 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 AP4E1Q9UPM8 1137 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 MFHAS1Q9Y4C4 1052 aa11.68□□□□□ -0.54
USP4-204ENST00000416417 COL27A1Q8IZC6 1860 aaPredicted RBP11.68□□□□□ -0.54
USP4-204ENST00000416417 LMO7DNF2Z398 122 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 EEF2KO00418 725 aaKnown RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 ATXN7O15265 892 aaPredicted RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 KLK10O43240 276 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 PRAMEF11O60813 436 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 TNFAIP3P21580 790 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 PSMA2P25787 234 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 LIG3P49916 1009 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 LRRC14Q15048 493 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 UGP2Q16851 508 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 PARP15Q460N3 678 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 C6orf132Q5T0Z8 1188 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 GPR155Q7Z3F1 870 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 TSEN2Q8NCE0 465 aaKnown RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 ZNF248Q8NDW4 579 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 ANKRD20A12PQ8NF67 263 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 PCDH19Q8TAB3 1148 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 CASKIN2Q8WXE0 1202 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 ZNF578Q96N58 590 aaPredicted RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 CCDC3Q9BQI4 270 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 SNRNP25Q9BV90 132 aaKnown RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 CPEB1Q9BZB8 566 aaKnown RBP11.67□□□□□ -0.54
USP4-204ENST00000416417 USP29Q9HBJ7 922 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 EVA1BQ9NVM1 165 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 WDR70Q9NW82 654 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 DKK3Q9UBP4 350 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 PADI4Q9UM07 663 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 DOLKQ9UPQ8 538 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 ASXL3Q9C0F0 2248 aa11.67□□□□□ -0.54
USP4-204ENST00000416417 GCN1Q92616 2671 aaKnown RBP11.66□□□□□ -0.54
USP4-204ENST00000416417 DFFAO00273 331 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 RIOK3O14730 519 aaKnown RBP11.66□□□□□ -0.54
USP4-204ENST00000416417 TPP1O14773 563 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 LZTS3O60299 673 aaPredicted RBP11.66□□□□□ -0.54
USP4-204ENST00000416417 KRT10P13645 584 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 CTSEP14091 401 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 FERP16591 822 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 PDX1P52945 283 aa11.66□□□□□ -0.54
USP4-204ENST00000416417 YPEL5P62699 121 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms