RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 TC2NQ8N9U0 490 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 TP53I13Q8NBR0 393 aaPredicted RBP19.24■□□□□ 0.67
SF3A1-202ENST00000411423 SLC35G2Q8TBE7 412 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 LRRN4Q8WUT4 740 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 ASB12Q8WXK4 309 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 ECHDC3Q96DC8 303 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 PSKH2Q96QS6 385 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 RBSNQ9H1K0 784 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 KLF15Q9UIH9 416 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 APOBEC2Q9Y235 224 aaKnown RBP19.24■□□□□ 0.67
SF3A1-202ENST00000411423 MSRB2Q9Y3D2 182 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 PTPRBP23467 1997 aa19.24■□□□□ 0.67
SF3A1-202ENST00000411423 TPRP12270 2363 aaKnown RBP19.24■□□□□ 0.67
SF3A1-202ENST00000411423 CEP295Q9C0D2 2601 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 TRIM38O00635 465 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 TRAFD1O14545 582 aaPredicted RBP19.23■□□□□ 0.67
SF3A1-202ENST00000411423 YKT6O15498 198 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 MAP3K6O95382 1288 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 CR2P20023 1033 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 CLDN6P56747 220 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 PFN3P60673 137 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 SGCGQ13326 291 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 MESDQ14696 234 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 TMCO4Q5TGY1 634 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 UNQ6494/PRO21346Q6UXR6 183 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 NYAP1Q6ZVC0 841 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 HCAR2Q8TDS4 363 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 CNDP2Q96KP4 475 aaKnown RBP19.23■□□□□ 0.67
SF3A1-202ENST00000411423 ZNF641Q96N77 438 aaPredicted RBP19.23■□□□□ 0.67
SF3A1-202ENST00000411423 TUBGCP5Q96RT8 1024 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 ZNHIT6Q9NWK9 470 aaKnown RBP19.23■□□□□ 0.67
SF3A1-202ENST00000411423 RCOR3Q9P2K3 495 aaPredicted RBP19.23■□□□□ 0.67
SF3A1-202ENST00000411423 FTSJ1Q9UET6 329 aa19.23■□□□□ 0.67
SF3A1-202ENST00000411423 MAP1BP46821 2468 aaKnown RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 AKR1B15C9JRZ8 316 aaPredicted RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 ENC1O14682 589 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 RIOK3O14730 519 aaKnown RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 LDOC1O95751 146 aaPredicted RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 DGKAP23743 735 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 SCNN1BP51168 640 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 MAXP61244 160 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 NSUN2Q08J23 767 aaKnown RBP eCLIP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 RALGDSQ12967 914 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 HADHQ16836 314 aaKnown RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 GAS2L3Q86XJ1 694 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 PQLC3Q8N755 202 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 DENND6BQ8NEG7 585 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 CXorf40AQ8TE69 158 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 RAPGEF5Q92565 580 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 CCDC42Q96M95 316 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 ZNF599Q96NL3 588 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 SEPT3Q9UH03 358 aa19.22■□□□□ 0.67
SF3A1-202ENST00000411423 ARID1BQ8NFD5 2236 aaPredicted RBP19.22■□□□□ 0.67
SF3A1-202ENST00000411423 FREM2Q5SZK8 3169 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 SPTY2D1-AS1A0A0U1RR47 76 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 FPGTO14772 594 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 PIAS2O75928 621 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 TM7SF2O76062 418 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 PROS1P07225 676 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 C6P13671 934 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 GM2AP17900 193 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 MAN1A1P33908 653 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 MMP12P39900 470 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 EIF2B5Q13144 721 aaKnown RBP19.21■□□□□ 0.67
SF3A1-202ENST00000411423 PDE1CQ14123 709 aaPredicted RBP19.21■□□□□ 0.67
SF3A1-202ENST00000411423 IHHQ14623 411 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 GRM3Q14832 879 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 PAFAH1B3Q15102 231 aaKnown RBP19.21■□□□□ 0.67
SF3A1-202ENST00000411423 ST3GAL2Q16842 350 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 INAVAQ3KP66 663 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 CCDC157Q569K6 752 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 ANKRD20A8PQ5CZ79 823 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 FAM182AQ5T1J6 154 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 ZSCAN30Q86W11 494 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 FAF2Q96CS3 445 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 MGME1Q9BQP7 344 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 TRIM5Q9C035 493 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 ATP13A3Q9H7F0 1226 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 NOD2Q9HC29 1040 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 TFR2Q9UP52 801 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 SHROOM3Q8TF72 1996 aa19.21■□□□□ 0.67
SF3A1-202ENST00000411423 KMT2BQ9UMN6 2715 aaPredicted RBP19.2■□□□□ 0.66
SF3A1-202ENST00000411423 MTA2O94776 668 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 TPM1P09493 284 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 MYF5P13349 255 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 SERPINA4P29622 427 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 ACADVLP49748 655 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 LIG3P49916 1009 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 GBE1Q04446 702 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 BCL2L1Q07817 233 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 GALNT2Q10471 571 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 SLC10A2Q12908 348 aaPredicted RBP19.2■□□□□ 0.66
SF3A1-202ENST00000411423 PTPRRQ15256 657 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 IRF4Q15306 451 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 WSCD2Q2TBF2 565 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 PROX2Q3B8N5 592 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 BRAT1Q6PJG6 821 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 DHRS13Q6UX07 377 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 CNGA4Q8IV77 575 aa19.2■□□□□ 0.66
SF3A1-202ENST00000411423 ATPAF2Q8N5M1 289 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms