RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ADAM2Q99965 735 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 DNAJC18Q9H819 358 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 CKLFQ9UBR5 152 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 SLITRK3O94933 977 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 CST1P01037 141 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 APTXQ7Z2E3 356 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 RASAL3Q86YV0 1011 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 TMEM199Q8N511 208 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM98AQ8NCA5 519 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPS7Q9Y2R9 242 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 DIP2AQ14689 1571 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 NRCAMQ92823 1304 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 RGSL1A5PLK6 1076 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PRODHO43272 600 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 OR10H3O60404 316 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 GMFBP60983 142 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 TSPAN14Q8NG11 270 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PIWIL2Q8TC59 973 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 HEXDCQ8WVB3 486 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 CRELD1Q96HD1 420 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 LACRTQ9GZZ8 138 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 FBXO6Q9NRD1 293 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PTPRUQ92729 1446 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 ZSCAN5CA6NGD5 496 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC28A2O43868 658 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 ASGR1P07306 291 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM86B2P0C5J1 330 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 BUD31P41223 144 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 RAP1GAP2Q684P5 730 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 OGDHLQ9ULD0 1010 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 MSCO60682 206 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 TRUB2O95900 331 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ATP4AP20648 1035 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 GRB14Q14449 540 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 DENND1CQ8IV53 801 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ACMSDQ8TDX5 336 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ERLEC1Q96DZ1 483 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 PGM2Q96G03 612 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 MARK4Q96L34 752 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 FTHL17Q9BXU8 183 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ABHD14A-ACY1A0A1B0GW23 586 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 COX4I1P13073 169 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ARCQ7LC44 396 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 MAP4K3Q8IVH8 894 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 DAW1Q8N136 415 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 CNPPD1Q9BV87 410 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 PCDHGB3Q9Y5G1 929 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 MAP2P11137 1827 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 A0A0X1KG70 313 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 TRIM38O00635 465 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 FGF19O95750 216 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC6A2P23975 617 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ABL2P42684 1182 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 HPS6Q86YV9 775 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM25EA8MYX2 175 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 TMCC2O75069 709 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 RGS20O76081 388 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 CBX6O95503 412 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 IDO1P14902 403 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 IFI35P80217 286 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 SERPINA13PQ6UXR4 307 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 PTCD2Q8WV60 388 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 CHID1Q9BWS9 393 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ZFP14Q9HCL3 533 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC35G4P0C7Q5 338 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ITGA3P26006 1051 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 GPD2P43304 727 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF143P52747 638 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ERVK-9P63128 1117 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 RPL38P63173 70 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 SRSF11Q05519 484 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 PPP1R15BQ5SWA1 713 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ARHGAP36Q6ZRI8 547 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 MBOAT7Q96N66 472 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 SEMA3GQ9NS98 782 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 CLUHO75153 1309 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ZBTB22O15209 634 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 OR5F1O95221 314 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 RAPSNQ13702 412 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 CBFBQ13951 182 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 LIPMQ5VYY2 423 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 RRAGCQ9HB90 399 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 ACTL7BQ9Y614 415 aa12.86□□□□□ -0.35
CCDC88C-204ENST00000389857 VBP1P61758 197 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 GRM3Q14832 879 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 NAIF1Q69YI7 327 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 C16orf46Q6P387 395 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 KLHL35Q6PF15 583 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM183BPQ6ZVS7 135 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF563Q8TA94 476 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CAPSLQ8WWF8 208 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 FRMD6Q96NE9 622 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PLEKHG4BQ96PX9 1271 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 MIR1-1HGQ9H1L0 117 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CCNB1IP1Q9NPC3 277 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPS33Q9Y291 106 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CHP2O43745 196 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CDH5P33151 784 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 C3orf14Q9HBI5 128 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 AASDHPPTQ9NRN7 309 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms