RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 PLEKHH3Q7Z736 793 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 TMC8Q8IU68 726 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 RHPN2Q8IUC4 686 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 CCDC36Q8IYA8 594 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 ARFGAP2Q8N6H7 521 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 OR13C2Q8NGS9 318 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 DTD1Q8TEA8 209 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 KTI12Q96EK9 354 aaPredicted RBP9.12□□□□□ -0.95
UBR4-201ENST00000375218 KCNJ15Q99712 375 aa9.12□□□□□ -0.95
UBR4-201ENST00000375218 ABI2Q9NYB9 513 aaPredicted RBP9.12□□□□□ -0.95
UBR4-201ENST00000375218 SRPRBQ9Y5M8 271 aaKnown RBP9.12□□□□□ -0.95
UBR4-201ENST00000375218 ZMYM6O95789 1325 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 MYO1FO00160 1098 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 C22orf31O95567 290 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 LGI1O95970 557 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CKMP06732 381 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PCSK1P29120 753 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 NMT1P30419 496 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 GPR3P46089 330 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 STX5Q13190 355 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TARBP2Q15633 366 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 COL13A1Q5TAT6 717 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 KLHL24Q6TFL4 600 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PIK3AP1Q6ZUJ8 805 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ZNF554Q86TJ5 538 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CMTR1Q8N1G2 835 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 AGGF1Q8N302 714 aaeCLIP9.11□□□□□ -0.95
UBR4-201ENST00000375218 BBS10Q8TAM1 723 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CAPSLQ8WWF8 208 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ABTB1Q969K4 478 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 ADIPOR1Q96A54 375 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 MAGED4Q96JG8 741 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 OCSTAMPQ9BR26 566 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 SF3B5Q9BWJ5 86 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 TBC1D13Q9NVG8 400 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PCDHA9Q9Y5H5 950 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 SSC5DA1L4H1 1573 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 PGRMC1O00264 195 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 KIAA0355O15063 1070 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TBX1O43435 398 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ULK1O75385 1050 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TUSC2O75896 110 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 NDST3O95803 873 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TFE3P19532 575 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 HNRNPA2B1P22626 353 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 IGFALSP35858 605 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PTGER3P43115 390 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 SKIDA1Q1XH10 827 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ZRANB3Q5FWF4 1079 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 GLRA4Q5JXX5 417 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 C18orf63Q68DL7 685 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 USP49Q70CQ1 688 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TRILQ7L0X0 811 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 FAM131BQ86XD5 332 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TBC1D16Q8TBP0 767 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PHF21BQ96EK2 531 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 NSMCE3Q96MG7 304 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 RAD9AQ99638 391 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 MYL10Q9BUA6 226 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 RAB20Q9NX57 234 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ASIC3Q9UHC3 531 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 SLC7A8Q9UHI5 535 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CYB5R1Q9UHQ9 305 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 HCN2Q9UL51 889 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 STARD13Q9Y3M8 1113 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 ROBO3Q96MS0 1386 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CXCL11O14625 94 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CABYRO75952 493 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CRYZL1O95825 349 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PNPP00491 289 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 AVPR2P30518 371 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 RESTQ13127 1097 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 GRM2Q14416 872 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 TAZQ16635 292 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 LEXMQ3ZCV2 418 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 SH3PXD2AQ5TCZ1 1133 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PRAMEF20Q5VT98 475 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 LAYNQ6UX15 382 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 NSMFQ6X4W1 530 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 MAML2Q8IZL2 1156 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 COA7Q96BR5 231 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 PGAP3Q96FM1 320 aaPredicted RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 METTL7AQ9H8H3 244 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 CNOT11Q9UKZ1 510 aaKnown RBP9.11□□□□□ -0.95
UBR4-201ENST00000375218 COL6A3P12111 3177 aa9.11□□□□□ -0.95
UBR4-201ENST00000375218 MAGEB6P1A0A0J9YX57 407 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 A0A1W2PQU0 124 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 GPRIN2O60269 458 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 ENTPD3O75355 529 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 ETS1P14921 441 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 CALB2P22676 271 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 ADRA1DP25100 572 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 LCN1P31025 176 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 TOB1P50616 345 aaPredicted RBP9.1□□□□□ -0.95
UBR4-201ENST00000375218 FSCN1Q16658 493 aaKnown RBP9.1□□□□□ -0.95
UBR4-201ENST00000375218 BEX5Q5H9J7 111 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 CDKL4Q5MAI5 379 aa9.1□□□□□ -0.95
UBR4-201ENST00000375218 PHACTR4Q8IZ21 702 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms