RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CCDC187A0A096LP49 1063 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GNG14A0A1W2PPG7 69 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CDC14CA4D256 554 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 WTIPA6NIX2 430 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 TMEM114B3SHH9 223 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 AKR1B15C9JRZ8 316 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 G3V2T6 193 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DVL2O14641 736 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCNT2O60583 730 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 RECQL4O94761 1208 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 GLCEO94923 617 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 POLBP06746 335 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 KCNC1P48547 511 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 AFF3P51826 1226 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 RIDAP52758 137 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ANTXR2P58335 489 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DMPKQ09013 629 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 DOC2BQ14184 412 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MELKQ14680 651 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 MORF4L2Q15014 288 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 FAM187BQ17R55 369 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 RASSF6Q6ZTQ3 369 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ACAD11Q709F0 780 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF677Q86XU0 584 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 C4orf19Q8IY42 314 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 Q8N9G6 341 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF527Q8NB42 609 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 C1orf131Q8NDD1 294 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 ZNF563Q8TA94 476 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 C9orf43Q8TAL5 461 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 BLOC1S5Q8TDH9 187 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 WDR92Q96MX6 357 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CCNL2Q96S94 520 aaPredicted RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 KXD1Q9BQD3 176 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 AIF1LQ9BQI0 150 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 CARS2Q9HA77 564 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 APOBEC3BQ9UH17 382 aaKnown RBP4.13□□□□□ -1.75
USH2A-202ENST00000366942 SLC5A6Q9Y289 635 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 NAALAD2Q9Y3Q0 740 aa4.13□□□□□ -1.75
USH2A-202ENST00000366942 PTPN23Q9H3S7 1636 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ARL5CA6NH57 179 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NT5C1B-RDH14C9J2C7 533 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FSCN2O14926 492 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 LRIG2O94898 1065 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PNMA6AP0CW24 399 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 TYRP14679 529 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TSPAN8P19075 237 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CD72P21854 359 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 MC3RP41968 323 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ROR1Q01973 937 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NAA35Q5VZE5 725 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GPR153Q6NV75 609 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC30A9Q6PML9 568 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZER1Q7Z7L7 766 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TRIM59Q8IWR1 403 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CPNE2Q96FN4 548 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 FAM163AQ96GL9 167 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 TBC1D10AQ9BXI6 508 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TRIM55Q9BYV6 548 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 XPO4Q9C0E2 1151 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 PCDHB16Q9NRJ7 776 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 EXD2Q9NVH0 621 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CALCOCO1Q9P1Z2 691 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ANAPC7Q9UJX3 599 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 V9GYQ6 96 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TULP4Q9NRJ4 1543 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 A6NLC8 198 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SCDO00767 359 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 KCNQ3O43525 872 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC25A17O43808 307 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SPATA31D3P0C874 917 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 RARAP10276 462 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PCSK2P16519 638 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SLC9A1P19634 815 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GPD1P21695 349 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CTNNA1P35221 906 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 PREPP48147 710 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SERPINB4P48594 390 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NAA20P61599 178 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 GNG11P61952 73 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 DYNLT1P63172 113 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ATP11AP98196 1134 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CNTN2Q02246 1040 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 HSF2Q03933 536 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PIGHQ14442 188 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 RRP1BQ14684 758 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 CLCA4Q14CN2 919 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 PTGES3Q15185 160 aaKnown RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 LY6KQ17RY6 165 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 KLHL17Q6TDP4 642 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 SPATA31D4Q6ZUB0 917 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CCNJLQ8IV13 435 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 CAMKVQ8NCB2 501 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 NUP37Q8NFH4 326 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ADAMTS18Q8TE60 1221 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 TMCO6Q96DC7 493 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 ZBED3Q96IU2 234 aaPredicted RBP4.12□□□□□ -1.75
USH2A-202ENST00000366942 LPAR4Q99677 370 aa4.12□□□□□ -1.75
USH2A-202ENST00000366942 FRMD8P1Q9BZ68 369 aaPredicted RBP4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms