RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 HMBSP08397 361 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 PDHA1P08559 390 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 THRAP10827 490 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 DNAJB13P59910 316 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 TBL3Q12788 808 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 CCNIQ14094 377 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 CSHL1Q14406 222 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ACAD11Q709F0 780 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 FBXW8Q8N3Y1 598 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 ZNF385DQ9H6B1 395 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 TLR8Q9NR97 1041 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 OLA1Q9NTK5 396 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 NDE1Q9NXR1 346 aa20.99■□□□□ 0.95
CCDC88B-203ENST00000359902 RGSL1A5PLK6 1076 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 OR6C75A6NL08 312 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 BAG2O95816 211 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 IGLV3-27P01718 113 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 ATP5F1P24539 256 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 KPNA2P52292 529 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 POLD3Q15054 466 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 SIRPB2Q5JXA9 342 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CIR1Q86X95 450 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 HPS6Q86YV9 775 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 EFCAB3Q8N7B9 438 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CCDC28BQ9BUN5 200 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CRISPLD1Q9H336 500 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 TMEM161AQ9NX61 479 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 UXTQ9UBK9 157 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 G3BP2Q9UN86 482 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CDYLQ9Y232 598 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 POMPQ9Y244 141 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC12A8A0AV02 714 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 RTN3O95197 1032 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CLCN5P51795 746 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 IL10RBQ08334 325 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 FAM83EQ2M2I3 478 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 TRIM67Q6ZTA4 783 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 PTAR1Q7Z6K3 402 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 CILP2Q8IUL8 1156 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 ZNF184Q99676 751 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 POMKQ9H5K3 350 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 NCKIPSDQ9NZQ3 722 aa20.98■□□□□ 0.95
CCDC88B-203ENST00000359902 LOC285095A0A1B0GVY8 99 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 NEMP2A6NFY4 417 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC7A4O43246 635 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 RAMP2O60895 175 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 ALDH1A1P00352 501 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 ETFBP38117 255 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 SERINC3Q13530 473 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 TECRLQ5HYJ1 363 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 PIWIL4Q7Z3Z4 852 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 ADGRG6Q86SQ4 1221 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 GABPB2Q8TAK5 448 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 CCDC124Q96CT7 223 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 MYEOVQ96EZ4 313 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 RPRD1AQ96P16 312 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 SUFUQ9UMX1 484 aa20.97■□□□□ 0.95
CCDC88B-203ENST00000359902 A6NHS1 94 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 TMEM233B4DJY2 109 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC22A2O15244 555 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 VNN2O95498 520 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 ATXN1LP0C7T5 689 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 ARSDP51689 593 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 MTTPP55157 894 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 KLC1Q07866 573 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 SLC14A2Q15849 920 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PDCD2Q16342 344 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PPM1LQ5SGD2 360 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 TMEM198Q66K66 360 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 RSPO2Q6UXX9 243 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 GALNT7Q86SF2 657 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 SNX32Q86XE0 403 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 RNF135Q8IUD6 432 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 MICAL1Q8TDZ2 1067 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PYDC1Q8WXC3 89 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 HDAC10Q969S8 669 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 CORO1CQ9ULV4 474 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 MTMR11A4FU01 709 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 CCL22O00626 93 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 FGFR3P22607 806 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 ACVRL1P37023 503 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PPARGP37231 505 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PFKPQ01813 784 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 PARP15Q460N3 678 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 HECTD2Q5U5R9 776 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 AGAP9Q5VTM2 703 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 RP9Q8TA86 221 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 UBXN10Q96LJ8 280 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 MFSD1Q9H3U5 465 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 KCTD3Q9Y597 815 aa20.96■□□□□ 0.95
CCDC88B-203ENST00000359902 MOXD2PA6NHM9 499 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 AIM2O14862 343 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 LDB2O43679 373 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 GJB3O75712 270 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 LTA4HP09960 611 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 CCDC166P0CW27 439 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 KCNA5P22460 613 aa20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 ADSLP30566 484 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-203ENST00000359902 LBRQ14739 615 aaKnown RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms