RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 HADHQ16836 314 aaKnown RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 DUOXA1Q1HG43 343 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 GOLGA7BQ2TAP0 167 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF394Q53GI3 561 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 SPDYCQ5MJ68 293 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 DCAF12L1Q5VU92 463 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CC2D1AQ6P1N0 951 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 OLFML1Q6UWY5 402 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 RABEPKQ7Z6M1 372 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 IFT20Q8IY31 132 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 TMEFF1Q8IYR6 380 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF655Q8N720 491 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ATAD1Q8NBU5 361 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CEP76Q8TAP6 659 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 MYCBPAPQ8TBZ2 947 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CCHCR1Q8TD31 782 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 RLN3Q8WXF3 142 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 IRGQQ8WZA9 623 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 SEC14L1Q92503 715 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ALG3Q92685 438 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 USP13Q92995 863 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 SMARCD1Q96GM5 515 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 FUBP3Q96I24 572 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CAPZA3Q96KX2 299 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CPXM1Q96SM3 734 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 DUSP16Q9BY84 665 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ECT2Q9H8V3 914 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 ANKZF1Q9H8Y5 726 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CSNK1G1Q9HCP0 422 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 TDP1Q9NUW8 608 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 RRN3Q9NYV6 651 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 GMIPQ9P107 970 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PCYOX1Q9UHG3 505 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 FEZ2Q9UHY8 353 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PILRBQ9UKJ0 227 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 TIMM13Q9Y5L4 95 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-201ENST00000355766 RAI2Q9Y5P3 530 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CFAP46Q8IYW2 2715 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 CACNA1EQ15878 2313 aa7.16□□□□□ -1.26
VPS13A-201ENST00000355766 PCDH15Q96QU1 1955 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF462Q96JM2 2506 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TMEM82A0PJX8 343 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 C2CD4BA6NLJ0 364 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 KRIT1O00522 736 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 PRRG2O14669 202 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 MDM4O15151 490 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF185O15231 689 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SH3BP5O60239 455 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 GREM1O60565 184 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 PHF2O75151 1096 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 RNF8O76064 485 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ALDH1A2O94788 518 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ATE1O95260 518 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 FGGP02679 453 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 FAM200BP0CF97 657 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 PTPN1P18031 435 aaKnown RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ABCG1P45844 678 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ZNF135P52742 658 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 DRG2P55039 364 aaKnown RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TSPY1Q01534 308 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SLC6A3Q01959 620 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SLC14A1Q13336 389 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 NFE2Q16621 373 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TAZQ16635 292 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 EFHC1Q5JVL4 640 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 FAM171BQ6P995 826 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 EMBQ6PCB8 327 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 DRICH1Q6PGQ1 229 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 FBXO38Q6PIJ6 1188 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TMCO3Q6UWJ1 677 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 DSTYKQ6XUX3 929 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 C4orf50Q6ZRC1 276 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TMEM150AQ86TG1 271 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ACOT1Q86TX2 421 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TTC30AQ86WT1 665 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SLC13A5Q86YT5 568 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 NAXDQ8IW45 347 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 RCOR2Q8IZ40 523 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 THEM5Q8N1Q8 247 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 PNPLA1Q8N8W4 532 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 MAB21L3Q8N8X9 362 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 NOA1Q8NC60 698 aaKnown RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 OR2I1PQ8NGU4 316 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 GRK7Q8WTQ7 553 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 C2orf15Q8WU43 125 aaKnown RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 TEKT4Q8WW24 435 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ATP2A3Q93084 1043 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 MAP6Q96JE9 813 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 CAMK1GQ96NX5 476 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 MCEEQ96PE7 176 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SEPT5Q99719 369 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 SYT15Q9BQS2 421 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 RAB17Q9H0T7 212 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 LRRC19Q9H756 370 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 ARFGAP3Q9NP61 516 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 CNGB3Q9NQW8 809 aa7.15□□□□□ -1.26
VPS13A-201ENST00000355766 DDX43Q9NXZ2 648 aaKnown RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 RCOR3Q9P2K3 495 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-201ENST00000355766 CYTH4Q9UIA0 394 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms