RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TNFAIP3P21580 790 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CXCR3P49682 368 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 YBX1P67809 324 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 OTUD4Q01804 1114 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 TNFAIP2Q03169 654 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 GBE1Q04446 702 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PRKCZQ05513 592 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NSUN2Q08J23 767 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZBTB17Q13105 803 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 DGKDQ16760 1214 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 DCAF4L1Q3SXM0 396 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RABGAP1LQ5R372 815 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TCERG1LQ5VWI1 586 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NADSYN1Q6IA69 706 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TLDC1Q6P9B6 456 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TIFABQ6ZNK6 161 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZNF280BQ86YH2 543 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM126BQ8IXS8 530 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 IFT20Q8IY31 132 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RCOR2Q8IZ40 523 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TEX26Q8N6G2 289 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C2orf69Q8N8R5 385 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD20A12PQ8NF67 263 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NETO1Q8TDF5 533 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TSPEARQ8WU66 669 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SKA1Q96BD8 255 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SNF8Q96H20 258 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 HPDLQ96IR7 371 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 C16orf92Q96LL3 132 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TEKT5Q96M29 485 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CSPG4P5Q96PW8 444 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ALS2CR12Q96Q35 445 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TRIB3Q96RU7 358 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KCNK16Q96T55 309 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TBCBQ99426 244 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZNF670Q9BS34 389 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS54-202ENST00000354504 DUSP16Q9BY84 665 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZCWPW1Q9H0M4 648 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZHX3Q9H4I2 956 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NMUR1Q9HB89 426 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PCDH9Q9HC56 1237 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM114A2Q9NRY5 505 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NRBP2Q9NSY0 501 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TMEM51Q9NW97 253 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 UCKL1Q9NWZ5 548 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 VPS18Q9P253 973 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SLC17A6Q9P2U8 582 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 STOML2Q9UJZ1 356 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 USP18Q9UMW8 372 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SRPK3Q9UPE1 567 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 NAALADL1Q9UQQ1 740 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 RNF114Q9Y508 228 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PSAT1Q9Y617 370 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SQORQ9Y6N5 450 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 TMEM265A0A087WTH1 108 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 A0A0U1RQF3 1178 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MYBPHLA2RUH7 354 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA6BA6NDN3 693 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 YJEFN3A6XGL0 299 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 HMGB1P1B2RPK0 211 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 E7ENQ6 273 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 PODXLO00592 558 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GAPDHSO14556 408 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 MFSD11O43934 449 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 DKC1O60832 514 aaKnown RBP eCLIP2.37□□□□□ -2.03
VPS54-202ENST00000354504 DAB1O75553 588 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 FBXO21O94952 628 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 OAZ2O95190 189 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CELF2O95319 508 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 KRT18P05783 430 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 DLDP09622 509 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 CSH1P0DML2 217 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 CSH2P0DML3 217 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 GLI4P10075 376 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 PTPN1P18031 435 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 CPOXP36551 454 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 EPHB1P54762 984 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 DAOAP59103 153 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MRPS6P82932 125 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 SP4Q02446 784 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ACVR1Q04771 509 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TMEM62Q0P6H9 643 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 KCNAB2Q13303 367 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 XRCC4Q13426 336 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 LSAMPQ13449 338 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 PIGHQ14442 188 aaPredicted RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 MLC1Q15049 377 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 LONRF1Q17RB8 773 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SMTNL2Q2TAL5 461 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 ZNF699Q32M78 642 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TRMT10CQ7L0Y3 403 aaKnown RBP2.37□□□□□ -2.03
VPS54-202ENST00000354504 TAS1R1Q7RTX1 841 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 RHOT1Q8IXI2 618 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 NME8Q8N427 588 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 FITM2Q8N6M3 262 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 TTC9BQ8N6N2 239 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 MNS1Q8NEH6 495 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 UBA3Q8TBC4 463 aa2.37□□□□□ -2.03
VPS54-202ENST00000354504 SPATA18Q8TC71 538 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms