RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CCDC185Q8N715 623 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 SCLYQ96I15 445 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 ENTPD4Q9Y227 616 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 MYH13Q9UKX3 1938 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 KCNH1O95259 989 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 MSX2P35548 267 aaPredicted RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 RPL38P63173 70 aaKnown RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 USP4Q13107 963 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 SPIDRQ14159 915 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 CPSF6Q16630 551 aaKnown RBP eCLIP10.24□□□□□ -0.77
CHD3-201ENST00000330494 GCNT7Q6ZNI0 430 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 FAM9CQ8IZT9 166 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 HJURPQ8NCD3 748 aaPredicted RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 WRAP53Q9BUR4 548 aaKnown RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 BRD9Q9H8M2 597 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 FAM220BPB1ANY3 271 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 IFNA14P01570 189 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 ITGA2BP08514 1039 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 CLEC4CQ8WTT0 213 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 CXorf40BQ96DE9 158 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 SLCO1B3Q9NPD5 702 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 SNX15Q9NRS6 342 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 ZSCAN32Q9NX65 697 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3DA0A087WVF3 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3IA0A087WXS9 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3EA0A087X179 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3KA0A087X1G2 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3FA6NER0 549 aaPredicted RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3LB9A6J9 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 NOL4O94818 638 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 C1RP00736 705 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3HP0C7X1 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TKTP29401 623 aaKnown RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 CDH13P55290 713 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 MBTD1Q05BQ5 628 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 BMT2Q1RMZ1 405 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3GQ6DHY5 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3CQ6IPX1 549 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 SAPCD2Q86UD0 394 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 COLGALT2Q8IYK4 626 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 TBC1D3Q8IZP1 549 aaPredicted RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 ART4Q93070 314 aa10.24□□□□□ -0.77
CHD3-201ENST00000330494 WRAP73Q9P2S5 460 aaPredicted RBP10.24□□□□□ -0.77
CHD3-201ENST00000330494 ISM1B1AKI9 464 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 SLC9A3R1O14745 358 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 ALADP13716 330 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 DGKKQ5KSL6 1271 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 PSRC1Q6PGN9 363 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 TMEM192Q8IY95 271 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 LRRC52Q8N7C0 313 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 OR4L1Q8NH43 312 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 PCED1BQ96HM7 432 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 LRRC19Q9H756 370 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 AGO3Q9H9G7 860 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 TMEM165Q9HC07 324 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 EVLQ9UI08 416 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 NALCNQ8IZF0 1738 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 PCCBP05166 539 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 CLTBP09497 229 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 SELPP16109 830 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 EPHA3P29320 983 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 TTPAP49638 278 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 WNT3AP56704 352 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 GBE1Q04446 702 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 CYP2A13Q16696 494 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 ZIK1Q3SY52 487 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 GPAT3Q53EU6 434 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 ZCCHC8Q6NZY4 707 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 EPHX4Q8IUS5 362 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 TCRBV9S1A1TA0A576 114 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 TMEM191CA6NGB0 347 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 TP73O15350 636 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 ELFN1P0C7U0 828 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 LPOP22079 712 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 ARL2P36404 184 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 PSEN1P49768 467 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 CACNA2D1P54289 1103 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 C16orf72Q14CZ0 275 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 FASTKD3Q14CZ7 662 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 NCF4Q15080 339 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 USP39Q53GS9 565 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 MON1AQ86VX9 555 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 AMIGO3Q86WK7 504 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 REPS1Q96D71 796 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 EBNA1BP2Q99848 306 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 E9PAM4 449 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 C1QTNF3-AMACRE9PGA6 284 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 AOC2O75106 756 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 ATP6V1C1P21283 382 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 FRG1Q14331 258 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 CLHC1Q8NHS4 586 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 SPATA22Q8NHS9 363 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 APBB2Q92870 758 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 NOL6Q9H6R4 1146 aaKnown RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 KLHL28Q9NXS3 571 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 SLC17A7Q9P2U7 560 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 ZFP37Q9Y6Q3 630 aaPredicted RBP10.23□□□□□ -0.77
CHD3-201ENST00000330494 B4GALT4O60513 344 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 HOXC6P09630 235 aa10.23□□□□□ -0.77
CHD3-201ENST00000330494 PSMD8P48556 350 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms