RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CAPSQ13938 189 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 GPR18Q14330 331 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 PPP2R5BQ15173 497 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 TBCEQ15813 527 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-201ENST00000326004 HSPB2Q16082 182 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CCNG2Q16589 344 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CES5AQ6NT32 575 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 GSTA5Q7RTV2 222 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CPLX4Q7Z7G2 160 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 SFTPA2Q8IWL1 248 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CCDC105Q8IYK2 499 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ADSSL1Q8N142 457 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 GJC3Q8NFK1 279 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 SMARCE1Q969G3 411 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 FAM149B1Q96BN6 582 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ZC3HAV1LQ96H79 300 aaKnown RBP3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ZNF48Q96MX3 618 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-201ENST00000326004 FCRL4Q96PJ5 515 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 BBS4Q96RK4 519 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 MXRA8Q9BRK3 442 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 POLDIP3Q9BY77 421 aaKnown RBP3.5□□□□□ -1.85
HMGB1-201ENST00000326004 FAM234AQ9H0X4 552 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 PLEKHA4Q9H4M7 779 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 PLAC1Q9HBJ0 212 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 IL36RNQ9UBH0 155 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 FAM96BQ9Y3D0 163 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 A3GALT2U3KPV4 340 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ARHGEF11O15085 1522 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 PGPEP1LA6NFU8 196 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 H3BNX3 289 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 INO80B-WBP1J3KQ70 363 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 VWA5AO00534 786 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 SPRY3O43610 288 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 LDB2O43679 373 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 USO1O60763 962 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 TOMM40O96008 361 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 SPARCP09486 303 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 TFPIP10646 304 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 CDAP32320 146 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 ARL3P36405 182 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 GNAQP50148 359 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 EIF5P55010 431 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 ROR2Q01974 943 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 DCTN2Q13561 401 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 KRT32Q14532 448 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 ARHGEF6Q15052 776 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 TCTN1Q2MV58 587 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 LEXMQ3ZCV2 418 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 ESCO2Q56NI9 601 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 DNTTIP2Q5QJE6 756 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 PRAMEF19Q5SWL8 479 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 CCDC30Q5VVM6 783 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 Q6ZTK2 550 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 MON1BQ7L1V2 547 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 IRF2BP2Q7Z5L9 587 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 CTU1Q7Z7A3 348 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 FBXL8Q96CD0 374 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 URB1-AS1Q96HZ7 61 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 MAP7D2Q96T17 732 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 PIP5K1AQ99755 562 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 MSTO1Q9BUK6 570 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 STRA6Q9BX79 667 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 NUF2Q9BZD4 464 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 RBM38Q9H0Z9 239 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 ASAH2Q9NR71 780 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 PCDHB16Q9NRJ7 776 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 KRT84Q9NSB2 600 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 DIAPH3Q9NSV4 1193 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 RNF7Q9UBF6 113 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 CTNNAL1Q9UBT7 734 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 LAS1LQ9Y4W2 734 aaKnown RBP3.49□□□□□ -1.85
HMGB1-201ENST00000326004 SQORQ9Y6N5 450 aa3.49□□□□□ -1.85
HMGB1-201ENST00000326004 UTYO14607 1347 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 TAF1P21675 1872 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 A0A1W2PRG0 241 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 PI4KAP2A4QPH2 592 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 MYMKA6NI61 221 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 HMGB1P1B2RPK0 211 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 EIF3CLB5ME19 914 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 NPIPB11E5RHQ5 1161 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 TGFB1I1O43294 461 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 KLK8O60259 260 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SOX30O94993 753 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 NDUFB4O95168 129 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 OAZ2O95190 189 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 LAMP2P13473 410 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ETFAP13804 333 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 HOXB2P14652 356 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 CDH2P19022 906 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 CD58P19256 250 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 EDN2P20800 178 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SCP2P22307 547 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 RGS2P41220 211 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 CXCR3P49682 368 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 PGGT1BP53609 377 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 NAP1L1P55209 391 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 RPS3AP61247 264 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 OLR1P78380 273 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SETQ01105 290 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 GOLGA8DPQ0D2H9 430 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms