RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 LMX1AQ8TE12 382 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 CPLX3Q8WVH0 158 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 HNRNPLLQ8WVV9 542 aaKnown RBP19.71■□□□□ 0.75
LIME1-201ENST00000309546 DUSP23Q9BVJ7 150 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 ISCUQ9H1K1 167 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 ZWILCHQ9H900 591 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 PCDH12Q9NPG4 1184 aa19.71■□□□□ 0.75
LIME1-201ENST00000309546 MBNL1Q9NR56 388 aaKnown RBP19.71■□□□□ 0.75
LIME1-201ENST00000309546 CWC15Q9P013 229 aaKnown RBP19.71■□□□□ 0.75
LIME1-201ENST00000309546 TSPAN11A1L157 253 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 GOLGA6L19H0YKK7 550 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 H3BRJ5 948 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 AQP9O43315 295 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 SUOXP51687 545 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 E2F1Q01094 437 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 SEMG2Q02383 582 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 UGP2Q16851 508 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 COL28A1Q2UY09 1125 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 DEFB133Q30KQ1 61 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 TMEM52BQ4KMG9 183 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 AFMIDQ63HM1 303 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 SRLQ86TD4 932 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 PSTKQ8IV42 348 aaKnown RBP19.7■□□□□ 0.74
LIME1-201ENST00000309546 HSPH1Q92598 858 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 ZNF641Q96N77 438 aaPredicted RBP19.7■□□□□ 0.74
LIME1-201ENST00000309546 DCBLD2Q96PD2 775 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 TUBGCP5Q96RT8 1024 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 EVA1BQ9NVM1 165 aa19.7■□□□□ 0.74
LIME1-201ENST00000309546 APOBEC3BQ9UH17 382 aaKnown RBP19.7■□□□□ 0.74
LIME1-201ENST00000309546 ANKRD11Q6UB99 2663 aaPredicted RBP19.7■□□□□ 0.74
LIME1-201ENST00000309546 A0A1W2PQJ5 194 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 BUB1BO60566 1050 aaPredicted RBP19.69■□□□□ 0.74
LIME1-201ENST00000309546 C6P13671 934 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 TCF4P15884 667 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 IL1R2P27930 398 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 SERPINA4P29622 427 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 ARL4AP40617 200 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 ZNF135P52742 658 aaPredicted RBP19.69■□□□□ 0.74
LIME1-201ENST00000309546 IL10RBQ08334 325 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 DPYSQ14117 519 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 HGSNATQ68CP4 663 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 ZCCHC8Q6NZY4 707 aaKnown RBP19.69■□□□□ 0.74
LIME1-201ENST00000309546 BRAT1Q6PJG6 821 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 ZSWIM9Q86XI8 627 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 TP53INP2Q8IXH6 220 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 PHACTR4Q8IZ21 702 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 BTN2A2Q8WVV5 523 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 RFFLQ8WZ73 363 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 THAP2Q9H0W7 228 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 TCEAL2Q9H3H9 227 aaPredicted RBP19.69■□□□□ 0.74
LIME1-201ENST00000309546 ATP13A3Q9H7F0 1226 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.69■□□□□ 0.74
LIME1-201ENST00000309546 SPASTQ9UBP0 616 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 BZW2Q9Y6E2 419 aaKnown RBP19.69■□□□□ 0.74
LIME1-201ENST00000309546 SHROOM3Q8TF72 1996 aa19.69■□□□□ 0.74
LIME1-201ENST00000309546 LY6G6EA0A0G2JKS1 128 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 LZTS3O60299 673 aaPredicted RBP19.68■□□□□ 0.74
LIME1-201ENST00000309546 MT-CO3P00414 261 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 PCK1P35558 622 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 EIF4A3P38919 411 aaKnown RBP19.68■□□□□ 0.74
LIME1-201ENST00000309546 MMP12P39900 470 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 PBX1P40424 430 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 DUSP3P51452 185 aaPredicted RBP19.68■□□□□ 0.74
LIME1-201ENST00000309546 YPEL5P62699 121 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 C1orf61Q13536 156 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 LRRC14Q15048 493 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 NFKBIBQ15653 356 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 CDKN3Q16667 212 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 PRRT3Q5FWE3 981 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 FAXCQ5TGI0 409 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 MACC1Q6ZN28 852 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 FAM181AQ8N9Y4 354 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 IFI44Q8TCB0 444 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 HCAR2Q8TDS4 363 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 BTBD6Q96KE9 485 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 IL12RB2Q99665 862 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 ATP8A1Q9Y2Q0 1164 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 CSNK1G3Q9Y6M4 447 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 U3KQA8 63 aa19.68■□□□□ 0.74
LIME1-201ENST00000309546 URB1O60287 2271 aaKnown RBP19.68■□□□□ 0.74
LIME1-201ENST00000309546 RIOK3O14730 519 aaKnown RBP19.67■□□□□ 0.74
LIME1-201ENST00000309546 SERPING1P05155 500 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 PCCBP05166 539 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 AMPD1P23109 780 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 CSNK1DP48730 415 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 HCAR3P49019 387 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 LIG3P49916 1009 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 SCNN1BP51168 640 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 ZBED6P86452 979 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 BCL2L1Q07817 233 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 RFTN1Q14699 578 aaPredicted RBP19.67■□□□□ 0.74
LIME1-201ENST00000309546 LBRQ14739 615 aaKnown RBP19.67■□□□□ 0.74
LIME1-201ENST00000309546 ACAP1Q15027 740 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 DPYSL2Q16555 572 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 TMCO4Q5TGY1 634 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 TMCO3Q6UWJ1 677 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 DCBLD1Q8N8Z6 715 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 SYN2Q92777 582 aaPredicted RBP19.67■□□□□ 0.74
LIME1-201ENST00000309546 LRRC61Q9BV99 259 aa19.67■□□□□ 0.74
LIME1-201ENST00000309546 NUP85Q9BW27 656 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms