RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TBL3Q12788 808 aaKnown RBP20.22■□□□□ 0.83
VPS53-201ENST00000291074 EML3Q32P44 896 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 METTL21CQ5VZV1 264 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 NXNQ6DKJ4 435 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 ARRDC2Q8TBH0 407 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 IL37Q9NZH6 218 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 BUD23O43709 281 aaKnown RBP20.22■□□□□ 0.83
VPS53-201ENST00000291074 UPP2O95045 317 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 NSUN2Q08J23 767 aaKnown RBP eCLIP20.22■□□□□ 0.83
VPS53-201ENST00000291074 CCNIQ14094 377 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 RNF19BQ6ZMZ0 732 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 SNX32Q86XE0 403 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 OR6P1Q8NGX9 317 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 MICAL1Q8TDZ2 1067 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 SH3RF2Q8TEC5 729 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 MARCH4Q9P2E8 410 aaPredicted RBP20.22■□□□□ 0.83
VPS53-201ENST00000291074 ARHGAP26Q9UNA1 814 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 FIS1Q9Y3D6 152 aa20.22■□□□□ 0.83
VPS53-201ENST00000291074 A0A087X1B8 175 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MTMR11A4FU01 709 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 AIM2O14862 343 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 HNRNPLP14866 589 aaKnown RBP eCLIP20.21■□□□□ 0.83
VPS53-201ENST00000291074 POLD2P49005 469 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 PRKAA2P54646 552 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 BTKQ06187 659 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 PTPRCAPQ14761 206 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 POLD3Q15054 466 aaPredicted RBP20.21■□□□□ 0.83
VPS53-201ENST00000291074 NADSYN1Q6IA69 706 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 PPFIBP2Q8ND30 876 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 GIPC2Q8TF65 315 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 HDAC10Q969S8 669 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MIEF2Q96C03 454 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MRPL57Q9BQC6 102 aaKnown RBP20.21■□□□□ 0.83
VPS53-201ENST00000291074 MARCH5Q9NX47 278 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 NDE1Q9NXR1 346 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 FAM92AA1XBS5 289 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MUSKO15146 869 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MAP3K7O43318 606 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 RAMP2O60895 175 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 ARSAP15289 507 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 PLK1P53350 603 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 MRPL58Q14197 206 aaKnown RBP20.21■□□□□ 0.83
VPS53-201ENST00000291074 TRIM67Q6ZTA4 783 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 ABI1Q8IZP0 508 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 CFAP52Q8N1V2 620 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 KDM1BQ8NB78 822 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 UCMAQ8WVF2 138 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 GPAMQ9HCL2 828 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 TLR8Q9NR97 1041 aaKnown RBP20.21■□□□□ 0.83
VPS53-201ENST00000291074 CLIC5Q9NZA1 410 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 ACTL7AQ9Y615 435 aa20.21■□□□□ 0.83
VPS53-201ENST00000291074 CLGNO14967 610 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 ATXN1LP0C7T5 689 aaKnown RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 PRDX6P30041 224 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 NUDT2P50583 147 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SP3Q02447 781 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TECRLQ5HYJ1 363 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TEX26Q8N6G2 289 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SLC26A7Q8TE54 656 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 ANKRD49Q8WVL7 239 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SUDS3Q9H7L9 328 aaPredicted RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 VPS45Q9NRW7 570 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TMEM161AQ9NX61 479 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 CDYLQ9Y232 598 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 POMPQ9Y244 141 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 A0A1W2PQ45 241 aaPredicted RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 A0A1W2PQY0 241 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 AOC2O75106 756 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SMNDC1O75940 238 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS53-201ENST00000291074 CCDC166P0CW27 439 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 OR1E1P30953 314 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 KCNQ1P51787 676 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 RTP2Q5QGT7 225 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SH2D4BQ5SQS7 431 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TMCO4Q5TGY1 634 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 RNF111Q6ZNA4 994 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 KIAA0408Q6ZU52 694 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 ACAD11Q709F0 780 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TMEM173Q86WV6 379 aaPredicted RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 CILP2Q8IUL8 1156 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 LMNTD2Q8IXW0 634 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 FAM136AQ96C01 138 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 RANBP9Q96S59 729 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SEMA3CQ99985 751 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 RTKNQ9BST9 563 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 S100A14Q9HCY8 104 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 GTSE1Q9NYZ3 720 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 SKAP2O75563 359 aaPredicted RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 PIRTP0C851 137 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 DNAJB1P25685 340 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 LEPRP48357 1165 aaKnown RBP20.2■□□□□ 0.82
VPS53-201ENST00000291074 DUSP4Q13115 394 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 HECTD2Q5U5R9 776 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 TNFRSF12AQ9NP84 129 aa20.2■□□□□ 0.82
VPS53-201ENST00000291074 IGLV3-27P01718 113 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 SLC11A1P49279 550 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 CDKN2DP55273 166 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 SERINC3Q13530 473 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 PIM3Q86V86 326 aa20.19■□□□□ 0.82
VPS53-201ENST00000291074 CALML6Q8TD86 181 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms