RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SYCP3Q8IZU3 236 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 FBXW8Q8N3Y1 598 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 DCLK2Q8N568 766 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 OR56A3Q8NH54 315 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TBC1D16Q8TBP0 767 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 CASP10Q92851 521 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 RAB24Q969Q5 203 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TMEM176AQ96HP8 235 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 NLRP4Q96MN2 994 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 CTAGE1Q96RT6 745 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SH3GL2Q99962 352 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 LBHD1Q9BQE6 289 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 RHOXF2Q9BQY4 288 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SLC39A3Q9BRY0 314 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 NAA11Q9BSU3 229 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 TUBB2BQ9BVA1 445 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 C1orf43Q9BWL3 253 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 PCED1AQ9H1Q7 454 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 ABCG8Q9H221 673 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 HEYLQ9NQ87 328 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 TRPV5Q9NQA5 729 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-202ENST00000278385 PPP1R14DQ9NXH3 145 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 GPRC5DQ9NZD1 345 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SEPT10Q9P0V9 454 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 HMG20BQ9P0W2 317 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SLC25A10Q9UBX3 287 aaPredicted RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 POLLQ9UGP5 575 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 SLCO3A1Q9UIG8 710 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TUBE1Q9UJT0 475 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 KCND3Q9UK17 655 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 TBC1D30Q9Y2I9 924 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-202ENST00000278385 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 BCORQ6W2J9 1755 aa4.72□□□□□ -1.65
CD44-202ENST00000278385 BRCA1P38398 1863 aaKnown RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 VIRMAQ69YN4 1812 aaKnown RBP4.72□□□□□ -1.65
CD44-202ENST00000278385 LAMB4A4D0S4 1761 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 RTL9Q8NET4 1388 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 FAM90A20PA6NIJ5 464 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 O00370 1275 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 GPR42O15529 346 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 TNFSF14O43557 240 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 PRAMEF4O60810 478 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 MFAP3LO75121 409 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 TULP3O75386 442 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 RECQL5O94762 991 aaPredicted RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 ALDH1A2O94788 518 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 UFL1O94874 794 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SLITRK3O94933 977 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 AHSGP02765 367 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CSF1RP07333 972 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 ANXA6P08133 673 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 PDGFRAP16234 1089 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 RPS12P25398 132 aaKnown RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 KLRK1P26718 216 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SERPINA4P29622 427 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 ICAM3P32942 547 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 MSX2P35548 267 aaPredicted RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 IGHMBP2P38935 993 aaKnown RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 EPS15P42566 896 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 MAGEA4P43358 317 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CAMLGP49069 296 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CENPAP49450 140 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 DIO1P49895 249 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 GMPSP49915 693 aaPredicted RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 ETV1P50549 477 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 ADCY7P51828 1080 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 DUSP2Q05923 314 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CRHR2Q13324 411 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CTBP1Q13363 440 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 RIPK1Q13546 671 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SNX1Q13596 522 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 PDK1Q15118 436 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 TBR1Q16650 682 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 IMMTQ16891 758 aaKnown RBP4.71□□□□□ -1.66
CD44-202ENST00000278385 BTBD16Q32M84 506 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 MYLK3Q32MK0 819 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SLC39A12Q504Y0 691 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 XKR9Q5GH70 373 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 BEND3Q5T5X7 828 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 LIPMQ5VYY2 423 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SHEQ5VZ18 495 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CTR9Q6PD62 1173 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 KLHL35Q6PF15 583 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 NCEH1Q6PIU2 408 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 ISLR2Q6UXK2 745 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 DBX2Q6ZNG2 339 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 MSANTD1Q6ZTZ1 278 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CCDC28AQ8IWP9 274 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 YAF2Q8IY57 180 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 UNC5BQ8IZJ1 945 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CMTM4Q8IZR5 234 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SIX6OS1Q8N1H7 587 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 OR5M3Q8NGP4 307 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 RFWD2Q8NHY2 731 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CCDC110Q8TBZ0 833 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 SUN5Q8TC36 379 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 CPT1BQ92523 772 aa4.71□□□□□ -1.66
CD44-202ENST00000278385 NKD2Q969F2 451 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms