RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 GRM3Q14832 879 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 CHI3L2Q15782 390 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 Q6ZNB5 142 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 GAREM2Q75VX8 874 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 RTL10Q7L3V2 364 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 CLNKQ7Z7G1 428 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 FAM217AQ8IXS0 508 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 TCF25Q9BQ70 676 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 TLE6Q9H808 572 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 EMCNQ9ULC0 261 aa15.43■□□□□ 0.06
SF3B4-201ENST00000271628 LAMA2P24043 3122 aaKnown RBP15.43■□□□□ 0.06
SF3B4-201ENST00000271628 MYLKQ15746 1914 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 INSIG1O15503 277 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SLC7A4O43246 635 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 GREM1O60565 184 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 DIAPH2O60879 1101 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CKMP06732 381 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CLNS1AP54105 237 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 BST1Q10588 318 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CTBP1Q13363 440 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 USP10Q14694 798 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 FASTKD1Q53R41 847 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 INO80DQ53TQ3 878 aaPredicted RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 WASHC2DQ5SRD0 308 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TMEM240Q5SV17 173 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 C16orf46Q6P387 395 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 RAPH1Q70E73 1250 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 MTDHQ86UE4 582 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TMC8Q8IU68 726 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CARNMT1Q8N4J0 409 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 PPP1R14CQ8TAE6 165 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 BRSK1Q8TDC3 778 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SP7Q8TDD2 431 aaPredicted RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 ADAMTS19Q8TE59 1207 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TSNARE1Q96NA8 513 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 LRRC3Q9BY71 257 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 THAP1Q9NVV9 213 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TMEM216Q9P0N5 145 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SLC39A10Q9ULF5 831 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 RIMKLBQ9ULI2 386 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TRAV19A0A0A6YYK7 116 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 LUC7L3O95232 432 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 NDST3O95803 873 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 TOP3BO95985 862 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 GLUD1P00367 558 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 GSRP00390 522 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 PROCP04070 461 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 COL6A2P12110 1019 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 BMPR1AP36894 532 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CD151P48509 253 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CSRP3P50461 194 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SCNN1BP51168 640 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 STX3Q13277 289 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CTC1Q2NKJ3 1217 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 ZNF470Q6ECI4 717 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 HTR3DQ70Z44 454 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 GALNT7Q86SF2 657 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CLEC14AQ86T13 490 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 DENND6AQ8IWF6 608 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SREK1Q8WXA9 508 aaKnown RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CAB39LQ9H9S4 337 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 RNPEPL1Q9HAU8 725 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 CXXC1Q9P0U4 656 aaPredicted RBP15.42■□□□□ 0.06
SF3B4-201ENST00000271628 COPG2Q9UBF2 871 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 MID2Q9UJV3 735 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 FBXO5Q9UKT4 447 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SH3BP1Q9Y3L3 701 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 RWDD3Q9Y3V2 267 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 SLC4A7Q9Y6M7 1214 aa15.42■□□□□ 0.06
SF3B4-201ENST00000271628 DENND4CQ5VZ89 1909 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 GFRA2O00451 464 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 TLL1O43897 1013 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 APOA4P06727 396 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 CR2P20023 1033 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 CALB2P22676 271 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 GLDCP23378 1020 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 GRK2P25098 689 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 GABRB3P28472 473 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 SLC1A2P43004 574 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 ZXDBP98169 803 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 CYP4F8P98187 520 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 NSUN2Q08J23 767 aaKnown RBP eCLIP15.41■□□□□ 0.06
SF3B4-201ENST00000271628 SLC12A1Q13621 1099 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 CYTH1Q15438 398 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 UBE2Q1Q7Z7E8 422 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 LONP2Q86WA8 852 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 CPXM2Q8N436 756 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 MRPL43Q8N983 215 aaKnown RBP15.41■□□□□ 0.06
SF3B4-201ENST00000271628 FAM13CQ8NE31 585 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 OR13J1Q8NGT2 312 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 NUDCD1Q96RS6 583 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 SCUBE2Q9NQ36 999 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 ASAH2Q9NR71 780 aa15.41■□□□□ 0.06
SF3B4-201ENST00000271628 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.41■□□□□ 0.062e-6■□□□□ 8.7
SF3B4-201ENST00000271628 LDB2O43679 373 aa15.4■□□□□ 0.06
SF3B4-201ENST00000271628 DNAJC6O75061 913 aa15.4■□□□□ 0.06
SF3B4-201ENST00000271628 SNNO75324 88 aaPredicted RBP15.4■□□□□ 0.06
SF3B4-201ENST00000271628 CBX6O95503 412 aa15.4■□□□□ 0.06
SF3B4-201ENST00000271628 FGF19O95750 216 aa15.4■□□□□ 0.06
SF3B4-201ENST00000271628 CRABP2P29373 138 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms