RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 LMCD1Q9NZU5 365 aa16.42■□□□□ 0.22
CTCF-201ENST00000264010 PCP4L1A6NKN8 68 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 M0QZQ0 153 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ITGBL1O95965 494 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 TPBGLP0DKB5 382 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ATP6V1C1P21283 382 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ATP5F1P24539 256 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 NFKBIAP25963 317 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 CCND3P30281 292 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 ALDH7A1P49419 539 aaKnown RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 IDH3AP50213 366 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 MPP1Q00013 466 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 TAF10Q12962 218 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 KIF19Q2TAC6 998 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 TRIM16LQ309B1 348 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 RFWD3Q6PCD5 774 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ZYG11AQ6WRX3 759 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 CCDC138Q96M89 665 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 OXCT1P55809 520 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ZNF177Q13360 481 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 KHDC1Q4VXA5 237 aaKnown RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 OTUD1Q5VV17 481 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 RIPOR1Q6ZS17 1223 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 SLC22A9Q8IVM8 553 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 TRPV1Q8NER1 839 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 MRPL9Q9BYD2 267 aaKnown RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 HMX1Q9NP08 348 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 FNIP2Q9P278 1114 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 HS3ST4Q9Y661 456 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 SNNO75324 88 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 HLA-DQB2P05538 268 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 TCN1P20061 433 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 CD68P34810 354 aaPredicted RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 NUMBP49757 651 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 METTL21CQ5VZV1 264 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 KIAA0408Q6ZU52 694 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 PIWIL4Q7Z3Z4 852 aaKnown RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 LRRTM3Q86VH5 581 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 PTCD3Q96EY7 689 aaKnown RBP16.41■□□□□ 0.22
CTCF-201ENST00000264010 COQ7Q99807 217 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 ARHGAP39Q9C0H5 1083 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 POMKQ9H5K3 350 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 EFCAB1Q9HAE3 211 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 SIP14410 1827 aa16.41■□□□□ 0.22
CTCF-201ENST00000264010 TBKBP1A7MCY6 615 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SUPT7LO94864 414 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 CHEK2O96017 543 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 IRF9Q00978 393 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 TMC5Q6UXY8 1006 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 ARHGAP36Q6ZRI8 547 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 GSTCDQ8NEC7 633 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 GPR22Q99680 433 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 KCNK13Q9HB14 408 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SATB2Q9UPW6 733 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SCML2Q9UQR0 700 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SQORQ9Y6N5 450 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 TRIM43BA6NCK2 446 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 MGEA5O60502 916 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 LTA4HP09960 611 aaKnown RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 COX4I1P13073 169 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 ALOX15P16050 662 aaPredicted RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 VWA5B1Q5TIE3 1220 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 KIAA0930Q6ICG6 404 aaPredicted RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 ZC3HC1Q86WB0 502 aaKnown RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 DENND6AQ8IWF6 608 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SCML4Q8N228 414 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 KYQ8NBH2 561 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 SEMA3CQ99985 751 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 MUC3BQ9H195 1237 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 UXTQ9UBK9 157 aaPredicted RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 F7P08709 466 aaPredicted RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 IGFBP6P24592 240 aaPredicted RBP16.4■□□□□ 0.22
CTCF-201ENST00000264010 ZNF781Q8N8C0 355 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 DDHD1Q8NEL9 900 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 C8orf48Q96LL4 319 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 RGS18Q9NS28 235 aa16.4■□□□□ 0.22
CTCF-201ENST00000264010 TK2O00142 265 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 PEX1O43933 1283 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 RHOBTB1O94844 696 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 CRTAMO95727 393 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 HOXB8P17481 243 aaPredicted RBP16.39■□□□□ 0.22
CTCF-201ENST00000264010 MPSTP25325 297 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 IL1RL1Q01638 556 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 TRIM32Q13049 653 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 TRIP4Q15650 581 aaPredicted RBP16.39■□□□□ 0.22
CTCF-201ENST00000264010 SNX32Q86XE0 403 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 TMA16Q96EY4 203 aaKnown RBP16.39■□□□□ 0.22
CTCF-201ENST00000264010 HMCESQ96FZ2 354 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 OMDQ99983 421 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 TRPM5Q9NZQ8 1165 aa16.39■□□□□ 0.22
CTCF-201ENST00000264010 MOXD2PA6NHM9 499 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 TLR5O60602 858 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 PPARGP37231 505 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 SEMA3BQ13214 749 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 NOGQ13253 232 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 NXNL1Q96CM4 212 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 UPF3AQ9H1J1 476 aaKnown RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 SEPT3Q9UH03 358 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 ZCWPW2A0A1B0GU75 182 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms