RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 SAGE2PA6NJ88 616 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 GABRDO14764 452 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 CHST10O43529 356 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ABCB1P08183 1280 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 CASP4P49662 377 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TBL3Q12788 808 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 FNDC3BQ53EP0 1204 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF470Q6ECI4 717 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 METTL2BQ6P1Q9 378 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 EXOC3L1Q86VI1 746 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZDHHC13Q8IUH4 622 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SLC44A2Q8IWA5 706 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 FAM126BQ8IXS8 530 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SPATA9Q9BWV2 254 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TTLL2Q9BWV7 592 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ITM2CQ9NQX7 267 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 RABL2AQ9UBK7 228 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 RABL2BQ9UNT1 228 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TMED5Q9Y3A6 229 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 LRRC72A6NJI9 287 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 USP27XA6NNY8 438 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NPHS1O60500 1241 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SIN3BO75182 1162 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NDUFS2O75306 463 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 LYPLA1O75608 230 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ETS1P14921 441 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NDUFV1P49821 464 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NOMO1Q15155 1222 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZBTB49Q6ZSB9 765 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 LRP10Q7Z4F1 713 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 GALNT13Q8IUC8 556 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 DEFB106AQ8N104 65 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SNX27Q96L92 541 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PURBQ96QR8 312 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TUBGCP5Q96RT8 1024 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 DNAJC18Q9H819 358 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 IFT80Q9P2H3 777 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SAMD4AQ9UPU9 718 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 CAPN6Q9Y6Q1 641 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 IRS2Q9Y4H2 1338 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SLC7A4O43246 635 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 BAIAP3O94812 1187 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 IFNGP01579 166 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SNRPB2P08579 225 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ELK3P41970 407 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 MRPS15P82914 257 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SLC34A1Q06495 639 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 KCNC3Q14003 757 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TSPEARQ8WU66 669 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF75CPQ92670 426 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TDRD1Q9BXT4 1180 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ELAC1Q9H777 363 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 REEP1Q9H902 201 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PADI4Q9UM07 663 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 RPP40O75818 363 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PAPSS2O95340 614 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 AP2A1O95782 977 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ESR1P03372 595 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PIM1P11309 404 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 KCNE1P15382 129 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF30P17039 623 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 KLRK1P26718 216 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SCNN1BP51168 640 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PSMD4P55036 377 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 POLE2P56282 527 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 FOXM1Q08050 763 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SPIRE1Q08AE8 756 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF844Q08AG5 666 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SP140Q13342 867 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NOP9Q86U38 636 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 KBTBD8Q8NFY9 601 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 FAM174AQ8TBP5 190 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 FBXO25Q8TCJ0 367 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 TMEM120AQ9BXJ8 343 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 YTHDF1Q9BYJ9 559 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 POPDC3Q9HBV1 291 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 SLC40A1Q9NP59 571 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 IL1RAPQ9NPH3 570 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 LZTS1Q9Y250 596 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 H0YJX3 145 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 EIF3FO00303 357 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ENO2P09104 434 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 RARAP10276 462 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 VARSP26640 1264 aaKnown RBP4.34□□□□□ -1.71
VPS13C-202ENST00000261517 PFKPQ01813 784 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 UBE3AQ05086 875 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 DGUOKQ16854 277 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 EIPR1Q53HC9 387 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 MIIPQ5JXC2 388 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 BRAT1Q6PJG6 821 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 NANOGNBQ7Z5D8 188 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 C11orf74Q86VG3 221 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 CPNE9Q8IYJ1 553 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 C4orf33Q8N1A6 199 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 ATXN3LQ9H3M9 355 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 MYRFQ9Y2G1 1151 aa4.34□□□□□ -1.71
VPS13C-202ENST00000261517 CAPN14A8MX76 684 aa4.34□□□□□ -1.72
VPS13C-202ENST00000261517 MGRN1O60291 552 aa4.34□□□□□ -1.72
VPS13C-202ENST00000261517 HMBSP08397 361 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms