RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 XPAP23025 273 aaPredicted RBP23.16■■□□□ 1.3
LSM4-201ENST00000252816 KDELR1P24390 212 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 SERPINA4P29622 427 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 MAGEA1P43355 309 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 RENBPP51606 427 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 SUOXP51687 545 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 GALNT2Q10471 571 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 ZNF235Q14590 738 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 TMEM52BQ4KMG9 183 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 ZFYVE27Q5T4F4 411 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 BRAT1Q6PJG6 821 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 KYAT3Q6YP21 454 aaKnown RBP23.16■■□□□ 1.3
LSM4-201ENST00000252816 Q6ZSR6 202 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 KANSL1Q7Z3B3 1105 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 PTAR1Q7Z6K3 402 aaPredicted RBP23.16■■□□□ 1.3
LSM4-201ENST00000252816 CXorf40AQ8TE69 158 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 ECHDC3Q96DC8 303 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 GPR27Q9NS67 375 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 TFR2Q9UP52 801 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 HYOU1Q9Y4L1 999 aa23.16■■□□□ 1.3
LSM4-201ENST00000252816 TRAFD1O14545 582 aaPredicted RBP23.15■■□□□ 1.3
LSM4-201ENST00000252816 RIOK3O14730 519 aaKnown RBP23.15■■□□□ 1.3
LSM4-201ENST00000252816 ITGAVP06756 1048 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 FTH1P19P0C7X4 201 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 GARSP41250 739 aaKnown RBP23.15■■□□□ 1.3
LSM4-201ENST00000252816 AP1S1P61966 158 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 SEMG2Q02383 582 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 GBE1Q04446 702 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 BCL2L1Q07817 233 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 CFAP58Q5T655 872 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 SLCO6A1Q86UG4 719 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 LRRC49Q8IUZ0 686 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 CENPTQ96BT3 561 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 PANX2Q96RD6 677 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 CDC6Q99741 560 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 MGME1Q9BQP7 344 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 TOR4AQ9NXH8 423 aa23.15■■□□□ 1.3
LSM4-201ENST00000252816 C3orf70A6NLC5 250 aaPredicted RBP23.14■■□□□ 1.29
LSM4-201ENST00000252816 TM7SF2O76062 418 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 ATXN1LP0C7T5 689 aaKnown RBP23.14■■□□□ 1.29
LSM4-201ENST00000252816 FECHP22830 423 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 HSPA9P38646 679 aaKnown RBP23.14■■□□□ 1.29
LSM4-201ENST00000252816 MMP13P45452 471 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 MAXP61244 160 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 ELP6Q0PNE2 266 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 SLC10A2Q12908 348 aaPredicted RBP23.14■■□□□ 1.29
LSM4-201ENST00000252816 MARC1Q5VT66 337 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 CCDC170Q8IYT3 715 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 TEX26Q8N6G2 289 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 PNPLA1Q8N8W4 532 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 DENND6BQ8NEG7 585 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 FAM174AQ8TBP5 190 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 LRRN4Q8WUT4 740 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 RNF157Q96PX1 679 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 NOD2Q9HC29 1040 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 ATP8A1Q9Y2Q0 1164 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 COQ6Q9Y2Z9 468 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 PCDHA13Q9Y5I0 950 aa23.14■■□□□ 1.29
LSM4-201ENST00000252816 SHROOM3Q8TF72 1996 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 LRRD1A4D1F6 860 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 FPGTO14772 594 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 HYAL3O43820 417 aaPredicted RBP23.13■■□□□ 1.29
LSM4-201ENST00000252816 SDC3O75056 442 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 COMTP21964 271 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 IGFALSP35858 605 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 MMP12P39900 470 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 INAVAQ3KP66 663 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 TPRG1LQ5T0D9 272 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 NSMCE1Q8WV22 266 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 CNTNAP3BQ96NU0 1288 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 NUDCD1Q96RS6 583 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 CNTNAP3Q9BZ76 1288 aa23.13■■□□□ 1.29
LSM4-201ENST00000252816 FRYQ5TBA9 3013 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 ANKRD36A6QL64 1941 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 SOWAHDA6NJG2 315 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 SLC1A1P43005 524 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 HADHBP55084 474 aaKnown RBP23.12■■□□□ 1.29
LSM4-201ENST00000252816 PFN3P60673 137 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 FZD2Q14332 565 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 LRRC38Q5VT99 294 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 ERAP2Q6P179 960 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 RAB44Q7Z6P3 723 aaPredicted RBP23.12■■□□□ 1.29
LSM4-201ENST00000252816 BBS5Q8N3I7 341 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 CHCHD4Q8N4Q1 142 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 EID2Q8N6I1 236 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 TP53I13Q8NBR0 393 aaPredicted RBP23.12■■□□□ 1.29
LSM4-201ENST00000252816 MAML1Q92585 1016 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 TSGA13Q96PP4 275 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 SCNM1Q9BWG6 230 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 NT5MQ9NPB1 228 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 SCUBE2Q9NQ36 999 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 MBNL1Q9NR56 388 aaKnown RBP23.12■■□□□ 1.29
LSM4-201ENST00000252816 DTLQ9NZJ0 730 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 PCDHGC4Q9Y5F7 938 aa23.12■■□□□ 1.29
LSM4-201ENST00000252816 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.11■■□□□ 1.29
LSM4-201ENST00000252816 ZNF487B1APH4 448 aa23.11■■□□□ 1.29
LSM4-201ENST00000252816 HTRA2O43464 458 aaPredicted RBP23.11■■□□□ 1.29
LSM4-201ENST00000252816 TNFSF14O43557 240 aa23.11■■□□□ 1.29
LSM4-201ENST00000252816 TRIM16O95361 564 aa23.11■■□□□ 1.29
LSM4-201ENST00000252816 C6P13671 934 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms