RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 EPN3Q9H201 632 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEE1Q9HCI5 957 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF839A8K0R7 811 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PLGP00747 810 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KCNK10P57789 538 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TGFBIQ15582 683 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FASTKD1Q53R41 847 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UBE2UQ5VVX9 321 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MLIPQ5VWP3 458 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RNLSQ5VYX0 342 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAM160B1Q5W0V3 765 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CFAP77Q6ZQR2 320 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TXNRD3Q86VQ6 643 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CACUL1Q86Y37 369 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NRROSQ86YC3 692 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 OR6Q1Q8NGQ2 317 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 OR14C36Q8NHC7 312 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PIK3R3Q92569 461 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC124Q96CT7 223 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF560Q96MR9 790 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ELOVL1Q9BW60 279 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GSKIPQ9P0R6 139 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PPIEQ9UNP9 301 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PLEKHA6Q9Y2H5 1048 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ACADSP16219 412 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FLI1Q01543 452 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PRKAA1Q13131 559 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RPS6KA1Q15418 735 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CTXN3Q4LDR2 81 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAM111BQ6SJ93 734 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ANKLE2Q86XL3 938 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 WDR49Q8IV35 697 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC117Q8IWD4 279 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MAB21L3Q8N8X9 362 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SEMA4DQ92854 862 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 C3orf49Q96BT1 292 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ELMO2Q96JJ3 720 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 BTBD6Q96KE9 485 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GLRX2Q9NS18 164 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PCOLCE2Q9UKZ9 415 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAM95CA0A1B0GW59 222 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NQO1P15559 274 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MPSTP25325 297 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NNMTP40261 264 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GARSP41250 739 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 METAP2P50579 478 aaKnown RBP eCLIP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GBX2P52951 348 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 USP14P54578 494 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KRT81Q14533 505 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TAF1AQ15573 450 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF423Q2M1K9 1284 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF568Q3ZCX4 644 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MPP7Q5T2T1 576 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UBAP2Q5T6F2 1119 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ANO7Q6IWH7 933 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZC3H14Q6PJT7 736 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CROCCP2Q86T23 111 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CMIPQ8IY22 773 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DPP10Q8N608 796 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PCNPQ8WW12 178 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GLG1Q92896 1179 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GCNAQ96QF7 691 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 COL25A1Q9BXS0 654 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 IDI2Q9BXS1 227 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UPF3AQ9H1J1 476 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 OCEL1Q9H607 264 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 POLD4Q9HCU8 107 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FGFR1OP2Q9NVK5 253 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KCNN3Q9UGI6 736 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GRIP1Q9Y3R0 1128 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TNKSO95271 1327 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UBN2Q6ZU65 1347 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FLRT2O43155 660 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GPRIN2O60269 458 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SNAPC5O75971 98 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TNFAIP8O95379 198 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SERPING1P05155 500 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 LCKP06239 509 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CIITAP33076 1130 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CDH15P55291 814 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TPTEP56180 551 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NOMO3P69849 1222 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 POU6F2P78424 691 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZFP69Q49AA0 526 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GRTP1Q5TC63 336 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 YOD1Q5VVQ6 348 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TATDN1Q6P1N9 297 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DARS2Q6PI48 645 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SYDE1Q6ZW31 735 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SLC35F3Q8IY50 421 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM104Q8NE00 496 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SPATA4Q8NEY3 305 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PSMA8Q8TAA3 256 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SECISBP2Q96T21 854 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PRMT1Q99873 361 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 OR10A4Q9H209 315 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 IL19Q9UHD0 177 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 EIF3LQ9Y262 564 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PCDHAC2Q9Y5I4 1007 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TTC21AQ8NDW8 1320 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms