RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DUSP10Q9Y6W6 482 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 KNL1Q8NG31 2342 aa18.5■□□□□ 0.55
CLN3-259ENST00000637551 FAM208BQ5VWN6 2430 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 GRID2IPA4D2P6 1211 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 CFAP69A5D8W1 941 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 C16orf96A6NNT2 1141 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 AREL1O15033 823 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 MMP13P45452 471 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 RWDD2BP57060 319 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 TAS2R38P59533 333 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 POLR2LP62875 67 aaKnown RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 IFI35P80217 286 aaPredicted RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 SLC10A7Q0GE19 358 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 ELP6Q0PNE2 266 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 TEAD4Q15561 434 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 SLC14A2Q15849 920 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 TRIM61Q5EBN2 209 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 IL27RAQ6UWB1 636 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 MFSD7Q6UXD7 560 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 SPOCD1Q6ZMY3 1216 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 ARHGAP36Q6ZRI8 547 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 PARS2Q7L3T8 475 aaKnown RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 SRLQ86TD4 932 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 PRPF39Q86UA1 669 aaKnown RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 NT5DC3Q86UY8 548 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 RGL4Q8IZJ4 473 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 RYBPQ8N488 228 aaPredicted RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 UBL4BQ8N7F7 174 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 TSEN2Q8NCE0 465 aaKnown RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 ORAI3Q9BRQ5 295 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 POLR1EQ9GZS1 481 aaKnown RBP18.49■□□□□ 0.55
CLN3-259ENST00000637551 SUV39H2Q9H5I1 410 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 TMEM74BQ9NUR3 256 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 KLHL11Q9NVR0 708 aa18.49■□□□□ 0.55
CLN3-259ENST00000637551 hCG_1818297A0A087WSY0 165 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3DA0A087WVF3 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3IA0A087WXS9 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3EA0A087X179 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3KA0A087X1G2 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 LNP1A1A4G5 178 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3FA6NER0 549 aaPredicted RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3LB9A6J9 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 MAGEC1O60732 1142 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 UGT2B4P06133 528 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3HP0C7X1 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 RPS21P63220 83 aaKnown RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 CCZ1BP86790 482 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 CCZ1P86791 482 aaPredicted RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 GBE1Q04446 702 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TMEM259Q4ZIN3 620 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 ATXN7L2Q5T6C5 722 aaPredicted RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3GQ6DHY5 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3CQ6IPX1 549 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 NAPEPLDQ6IQ20 393 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 BBS12Q6ZW61 710 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 ARMCX6Q7L4S7 300 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 PEX26Q7Z412 305 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 HORMAD1Q86X24 394 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 CCDC13Q8IYE1 715 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 TBC1D3Q8IZP1 549 aaPredicted RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 DENND6BQ8NEG7 585 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 FEM1CQ96JP0 617 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 DESI2Q9BSY9 194 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 RALYQ9UKM9 306 aaKnown RBP18.48■□□□□ 0.55
CLN3-259ENST00000637551 AMFRQ9UKV5 643 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 FADS3Q9Y5Q0 445 aa18.48■□□□□ 0.55
CLN3-259ENST00000637551 APOC4-APOC2K7ER74 178 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 HTRA2O43464 458 aaPredicted RBP18.47■□□□□ 0.55
CLN3-259ENST00000637551 DFNA5O60443 496 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 APOC2P02655 101 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 ZNF883P0CG24 379 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 CCNB1P14635 433 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 CA4P22748 312 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 PEX5P50542 639 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 METAP1P53582 386 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 BCL2L1Q07817 233 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 XRCC4Q13426 336 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 AASDHQ4L235 1098 aaPredicted RBP18.47■□□□□ 0.55
CLN3-259ENST00000637551 SLC45A4Q5BKX6 768 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 TP53INP2Q8IXH6 220 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 PDLIM2Q96JY6 352 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 KLHL32Q96NJ5 620 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 VAT1Q99536 393 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 EIF2B4Q9UI10 523 aaKnown RBP18.47■□□□□ 0.55
CLN3-259ENST00000637551 TFR2Q9UP52 801 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 LAMA1P25391 3075 aa18.47■□□□□ 0.55
CLN3-259ENST00000637551 CABIN1Q9Y6J0 2220 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 CNOT1A5YKK6 2376 aaKnown RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 PLXNA2O75051 1894 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 MACROD2A1Z1Q3 448 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 UPK3BL1B0FP48 263 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 HACD1B0YJ81 288 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 UPK3BL2E5RIL1 263 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 PRAMEF26H0Y7S4 382 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 TRAFD1O14545 582 aaPredicted RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 ARHGAP33O14559 1287 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 VILLO15195 856 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 FSBPO95073 299 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 SLC10A2Q12908 348 aaPredicted RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 SLC14A1Q13336 389 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms