RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CLNK	Q7Z7G1	428 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	MFN1	Q8IWA4	741 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	BHMT	Q93088	406 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SIGLEC10	Q96LC7	697 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	AGAP3	Q96P47	875 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	IL12RB2	Q99665	862 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SIKE1	Q9BRV8	207 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	IQCG	Q9H095	443 aa	Known RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	MUC3B	Q9H195	1237 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	TRPV4	Q9HBA0	871 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	GGT7	Q9UJ14	662 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ZFP69B	Q9UJL9	534 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	CDH7	Q9ULB5	785 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	PLLP	Q9Y342	182 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	TRIOBP	Q9H2D6	2365 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341		J3KR12	359 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	COPE	O14579	308 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ZBTB24	O43167	697 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	PRAMEF11	O60813	436 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	TBX10	O75333	385 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	T-ENOL	P0DO92	83 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	HOXD9	P28356	352 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	VIPR2	P41587	438 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SERPINB4	P48594	390 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	DLX2	Q07687	328 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	COL19A1	Q14993	1142 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	FAM182A	Q5T1J6	154 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	MARC1	Q5VT66	337 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	RNF219	Q5W0B1	726 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ADGRG2	Q8IZP9	1017 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF557	Q8N988	423 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	OR7D4	Q8NG98	312 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	OR52K2	Q8NGK3	314 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	AGAP11	Q8TF27	550 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	IRF7	Q92985	503 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	TTC17	Q96AE7	1141 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	PABPC5	Q96DU9	382 aa	Known RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SERAC1	Q96JX3	654 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF599	Q96NL3	588 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	GAS2L1	Q99501	681 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SPON2	Q9BUD6	331 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	ATP13A1	Q9HD20	1204 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SPHK2	Q9NRA0	654 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.84	□□□□□ -0.51	4e-6	■■■■□ 24.3
VRK3-223	ENST00000601341	OBP2A	Q9NY56	170 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	MOCS1	Q9NZB8	636 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	SLC17A7	Q9P2U7	560 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	CDH22	Q9UJ99	828 aa		11.84	□□□□□ -0.51
VRK3-223	ENST00000601341	DOCK4	Q8N1I0	1966 aa		11.83	□□□□□ -0.51
VRK3-223	ENST00000601341	NUP205	Q92621	2012 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	TRIM49D1	C9J1S8	452 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	KDELR3	O43731	214 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	CCDC22	O60826	627 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	PEX11B	O96011	259 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	LMNA	P02545	664 aa	Known RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	DLD	P09622	509 aa	Known RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	PYGB	P11216	843 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	PSMB4	P28070	264 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	CRHR1	P34998	444 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	MTHFR	P42898	656 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	FSCB	Q5H9T9	825 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	FAXC	Q5TGI0	409 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	TMCO4	Q5TGY1	634 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	KYAT3	Q6YP21	454 aa	Known RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	TMEM25	Q86YD3	366 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	CNTD1	Q8N815	330 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	FIBIN	Q8TAL6	211 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	BPIFB1	Q8TDL5	484 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	USP33	Q8TEY7	942 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	E2F7	Q96AV8	911 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	MRRF	Q96E11	262 aa	Known RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	PPP1R2P1	Q96PQ5	205 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	SRPK1	Q96SB4	655 aa	Known RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	FEM1A	Q9BSK4	669 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	ACE2	Q9BYF1	805 aa	Predicted RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	GBA3	Q9H227	469 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	LINC00597	Q9H2U6	94 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	NPHS2	Q9NP85	383 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	KCNK4	Q9NYG8	393 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	PLK2	Q9NYY3	685 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	SIRPG	Q9P1W8	387 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	VPS28	Q9UK41	221 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	WNT6	Q9Y6F9	365 aa		11.83	□□□□□ -0.52
VRK3-223	ENST00000601341	RFPL1	O75677	317 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	PENK	P01210	267 aa	Predicted RBP	11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	CD68	P34810	354 aa	Predicted RBP	11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	LTBR	P36941	435 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	ARFIP2	P53365	341 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	FRG1	Q14331	258 aa	Known RBP	11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	PRPSAP1	Q14558	356 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	LBR	Q14739	615 aa	Known RBP	11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	UNC5A	Q6ZN44	842 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	ZNF534	Q76KX8	674 aa		11.82	□□□□□ -0.52
VRK3-223	ENST00000601341	TEX26	Q8N6G2	289 aa		11.82	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms