RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 KIF5AQ12840 1032 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 ZNF284Q2VY69 593 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 CFAP58Q5T655 872 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 SLC9A4Q6AI14 798 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 NAPEPLDQ6IQ20 393 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 KIAA1161Q6NSJ0 714 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 IL27RAQ6UWB1 636 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 TTC7BQ86TV6 843 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 ZSCAN30Q86W11 494 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 RFX6Q8HWS3 928 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 MINDY1Q8N5J2 469 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 FATE1Q969F0 183 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 SKA1Q96BD8 255 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 FEM1CQ96JP0 617 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 ZNF830Q96NB3 372 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-215ENST00000601150 DESI2Q9BSY9 194 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 DTLQ9NZJ0 730 aa17.04■□□□□ 0.32
TRIM28-215ENST00000601150 ZFR2Q9UPR6 939 aaKnown RBP17.04■□□□□ 0.32
TRIM28-215ENST00000601150 TSPAN11A1L157 253 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 PRAMEF26H0Y7S4 382 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 NEMP1O14524 444 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 VILLO15195 856 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 TIMP2P16035 220 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 XPAP23025 273 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-215ENST00000601150 CCNCP24863 283 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 CD38P28907 300 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 MMP13P45452 471 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 SCNN1BP51168 640 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 SUOXP51687 545 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 RPS21P63220 83 aaKnown RBP17.03■□□□□ 0.32
TRIM28-215ENST00000601150 BNC1Q01954 994 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 BCL2L1Q07817 233 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 SLC10A2Q12908 348 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-215ENST00000601150 HNRNPDQ14103 355 aaKnown RBP17.03■□□□□ 0.32
TRIM28-215ENST00000601150 TAZQ16635 292 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 UAP1L1Q3KQV9 507 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 TMEM259Q4ZIN3 620 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 SLC45A4Q5BKX6 768 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 BRAT1Q6PJG6 821 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 LAYNQ6UX15 382 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 MFSD7Q6UXD7 560 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 CAMK1DQ8IU85 385 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 KATNAL2Q8IYT4 538 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 PGBD5Q8N414 524 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 TEX26Q8N6G2 289 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 PLD5Q8N7P1 536 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 OR2I1PQ8NGU4 316 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 MAML1Q92585 1016 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 KLK6Q92876 244 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 HDAC11Q96DB2 347 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 NUDCD1Q96RS6 583 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 MGME1Q9BQP7 344 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 DNAAF2Q9NVR5 837 aaKnown RBP17.03■□□□□ 0.32
TRIM28-215ENST00000601150 ANKRD6Q9Y2G4 727 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 HEY1Q9Y5J3 304 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 LRRK1Q38SD2 2015 aa17.03■□□□□ 0.32
TRIM28-215ENST00000601150 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-215ENST00000601150 A0A1W2PR77 199 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 TM4SF5O14894 197 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 WNT9AO14904 365 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 AREL1O15033 823 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 MATN3O15232 486 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SLC31A1O15431 190 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SPINT1O43278 529 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 OPHN1O60890 802 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 ZRANB2O95218 330 aaKnown RBP eCLIP17.02■□□□□ 0.32
TRIM28-215ENST00000601150 CER1O95813 267 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 PRLRP16471 622 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 CDKN2BP42772 138 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 C21orf59P57076 290 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 TFDP2Q14188 446 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 KIF19Q2TAC6 998 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SEL1L3Q68CR1 1132 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SPOCD1Q6ZMY3 1216 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 RCOR2Q8IZ40 523 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 PAF1Q8N7H5 531 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 MFSD2AQ8NA29 543 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 CCNYQ8ND76 341 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 CCDC112Q8NEF3 446 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 KIAA1524Q8TCG1 905 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 GRPEL1Q9HAV7 217 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 NT5MQ9NPB1 228 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SCUBE2Q9NQ36 999 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 HAUS2Q9NVX0 235 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 ITM2BQ9Y287 266 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 SNX11Q9Y5W9 270 aa17.02■□□□□ 0.32
TRIM28-215ENST00000601150 ASCC3Q8N3C0 2202 aaKnown RBP17.01■□□□□ 0.31
TRIM28-215ENST00000601150 DCDC2BA2VCK2 349 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 UPK3BL1B0FP48 263 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 UPK3BL2E5RIL1 263 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 GJB3O75712 270 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 WNT1P04628 370 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 CR2P20023 1033 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 HNRNPA2B1P22626 353 aaKnown RBP17.01■□□□□ 0.31
TRIM28-215ENST00000601150 AKT2P31751 481 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 MARCKSL1P49006 195 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 DYNLT1P63172 113 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 ELP6Q0PNE2 266 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 STAT4Q14765 748 aa17.01■□□□□ 0.31
TRIM28-215ENST00000601150 HLA-BQ31612 363 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms