RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TFAP2CQ92754 450 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 LRIG1Q96JA1 1093 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 KLHL15Q96M94 604 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS53-219ENST00000576019 SERHL2Q9H4I8 314 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 SLC32A1Q9H598 525 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 VSX1Q9NZR4 365 aaPredicted RBP6.04□□□□□ -1.44
VPS53-219ENST00000576019 SELENONQ9NZV5 590 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TBX21Q9UL17 535 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 MKLN1Q9UL63 735 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 CCL27Q9Y4X3 112 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 TRPV2Q9Y5S1 764 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 KIF20BQ96Q89 1820 aa6.04□□□□□ -1.44
VPS53-219ENST00000576019 GOLGA6L10A0A0M3HER8 536 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 EIF4E1BA6NMX2 242 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 TBKBP1A7MCY6 615 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ERVV-1B6SEH8 477 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 TEX22C9J3V5 150 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 H0YAE9 185 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 GCOM1H8Y6P7 765 aaPredicted RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 SNAP23O00161 211 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 GRM8O00222 908 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 FMO6PO60774 539 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 PSMD10O75832 226 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 WDR47O94967 919 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 MYBL1P10243 752 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 COX7A2P14406 83 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ARL1P40616 181 aaPredicted RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 SLC12A2P55011 1212 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 EIF4A1P60842 406 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 OLR1P78380 273 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 CEBPZQ03701 1054 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 GOLGA8FQ08AF8 430 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 GOLGA8DPQ0D2H9 430 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 CCNIQ14094 377 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 NFE2L1Q14494 772 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ACOX1Q15067 660 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 BMT2Q1RMZ1 405 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ZNF667Q5HYK9 610 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 STRIP1Q5VSL9 837 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 GKAP1Q5VSY0 366 aaPredicted RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 CAVIN1Q6NZI2 390 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 CDC73Q6P1J9 531 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 TRAT1Q6PIZ9 186 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 SLC30A9Q6PML9 568 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 NFXL1Q6ZNB6 911 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 B3GNT8Q7Z7M8 397 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ZNF34Q8IZ26 560 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 METTL25Q8N6Q8 603 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ANKRD13CQ8N6S4 541 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 TEX9Q8N6V9 391 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 PLD5Q8N7P1 536 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 KYQ8NBH2 561 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 DEPDC1BQ8WUY9 529 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ZFPM2Q8WW38 1151 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 POMGNT1Q8WZA1 660 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 NPIPB3Q92617 1050 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 CITED2Q99967 270 aaPredicted RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 THUMPD3Q9BV44 507 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 ACAT2Q9BWD1 397 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 TEX12Q9BXU0 123 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 TTC12Q9H892 705 aaPredicted RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 POLR1BQ9H9Y6 1135 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 SCPEP1Q9HB40 452 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 PDE11AQ9HCR9 933 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 IL23AQ9NPF7 189 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 MPP6Q9NZW5 540 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 CD207Q9UJ71 328 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 ADAMTS6Q9UKP5 1117 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 SLC12A4Q9UP95 1085 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 SORCS3Q9UPU3 1222 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 PTRH2Q9Y3E5 179 aaKnown RBP6.03□□□□□ -1.44
VPS53-219ENST00000576019 ADAM18Q9Y3Q7 739 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 USP16Q9Y5T5 823 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 SNX14Q9Y5W7 946 aa6.03□□□□□ -1.44
VPS53-219ENST00000576019 A0A0U1RQK1 487 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 hCG_1809904A0A1W2PP81 198 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 A0A1W2PPE2 198 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 A0A1W2PR64 198 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ZNF320A2RRD8 509 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ENO4A6NNW6 628 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ABLIM1O14639 778 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PSMA7O14818 248 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PER2O15055 1255 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 DIAPH2O60879 1101 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CYP7B1O75881 506 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 UFL1O94874 794 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CFIP05156 583 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 SELLP14151 372 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ATF7P17544 494 aaPredicted RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 ITGB5P18084 799 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 VIPR1P32241 457 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 GP5P40197 560 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PCP4P48539 62 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 RRP1P56182 461 aaKnown RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 HSD17B7P56937 341 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 EFNB1P98172 346 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 TIAL1Q01085 375 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS53-219ENST00000576019 C17orf67Q0P5P2 114 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 COASYQ13057 564 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms