RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ENPP7Q6UWV6 458 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 PARS2Q7L3T8 475 aaKnown RBP11.24□□□□□ -0.61
VPS53-207ENST00000570510 BEND5Q7L4P6 421 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 KDELC2Q7Z4H8 507 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 SPRED1Q7Z699 444 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 TAF8Q7Z7C8 310 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 TTC7BQ86TV6 843 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 FAM46DQ8NEK8 389 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 CXorf40AQ8TE69 158 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 CENPTQ96BT3 561 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 EPAS1Q99814 870 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 ASPSCR1Q9BZE9 553 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 ZMYND15Q9H091 742 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 SEMA6CQ9H3T2 930 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 RDH14Q9HBH5 336 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 PRDM8Q9NQV8 689 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 TBC1D30Q9Y2I9 924 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 OR51B4Q9Y5P0 310 aa11.24□□□□□ -0.61
VPS53-207ENST00000570510 ANKRD17O75179 2603 aaKnown RBP11.24□□□□□ -0.61
VPS53-207ENST00000570510 C16orf96A6NNT2 1141 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 B4DGG1 531 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 MKRN2OSH3BPM6 223 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 RNF103O00237 685 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 HGSO14964 777 aaPredicted RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 CETN3O15182 167 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 NKX2-8O15522 239 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 CPNE6O95741 557 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 TNFP01375 233 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 CCL4P13236 92 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 PNLIPP16233 465 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 GNLYP22749 145 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 ALDH4A1P30038 563 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 CSTF2P33240 577 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS53-207ENST00000570510 UQCRFS1P47985 274 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 CCNHP51946 323 aaPredicted RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 SRP54P61011 504 aaKnown RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 NME3Q13232 169 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 C16orf72Q14CZ0 275 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 CARD16Q5EG05 197 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 ZNF787Q6DD87 383 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 SMYD5Q6GMV2 418 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 C16orf46Q6P387 395 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 LRRC31Q6UY01 552 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 NRSN1Q8IZ57 195 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 PCDH20Q8N6Y1 951 aaKnown RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 DCAF4L2Q8NA75 395 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 RCBTB1Q8NDN9 531 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 SLC45A3Q96JT2 553 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 GOLPH3LQ9H4A5 285 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 DPEP2Q9H4A9 486 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 THAP9Q9H5L6 903 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 HECAQ9UBI9 543 aaPredicted RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 KLQ9UEF7 1012 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 PNMA8BQ9ULN7 279 aaPredicted RBP11.23□□□□□ -0.61
VPS53-207ENST00000570510 ITM2BQ9Y287 266 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 WASF2Q9Y6W5 498 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 ABCA12Q86UK0 2595 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 LRRK1Q38SD2 2015 aa11.23□□□□□ -0.61
VPS53-207ENST00000570510 RHPN2P1A8MT19 583 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 KRIT1O00522 736 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 RAD1O60671 282 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 MMP20O60882 483 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 XPAP23025 273 aaPredicted RBP11.22□□□□□ -0.61
VPS53-207ENST00000570510 OR1E1P30953 314 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 IGFALSP35858 605 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 GGCXP38435 758 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 PEX5P50542 639 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 IRAK1P51617 712 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 LRRC63Q05C16 580 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 SLC20A2Q08357 652 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 CDC20Q12834 499 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 STIM1Q13586 685 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 ZNF805Q5CZA5 627 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 EFHC2Q5JST6 749 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 CERCAMQ5T4B2 595 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 DCAF12Q5T6F0 453 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 ZNF658Q5TYW1 1059 aaPredicted RBP11.22□□□□□ -0.61
VPS53-207ENST00000570510 SETD3Q86TU7 594 aaPredicted RBP11.22□□□□□ -0.61
VPS53-207ENST00000570510 FAM129CQ86XR2 697 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 SLITRK4Q8IW52 837 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 FAM114A1Q8IWE2 563 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 SRRM1Q8IYB3 904 aaKnown RBP11.22□□□□□ -0.61
VPS53-207ENST00000570510 PPM1KQ8N3J5 372 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 GALNT11Q8NCW6 608 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 AGBL5Q8NDL9 886 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 ART4Q93070 314 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 PSMB7Q99436 277 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 TM6SF2Q9BZW4 377 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 CEP44Q9C0F1 390 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 CUEDC1Q9NWM3 386 aaPredicted RBP11.22□□□□□ -0.61
VPS53-207ENST00000570510 SLC39A1Q9NY26 324 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 TP53TG5Q9Y2B4 290 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 HS3ST4Q9Y661 456 aa11.22□□□□□ -0.61
VPS53-207ENST00000570510 DOPEY1Q5JWR5 2465 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 A0A0D9SEW6 157 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 NUDT21O43809 227 aaKnown RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 PAGE1O75459 146 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 TCN2P20062 427 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 TNFRSF8P28908 595 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 LRRC14Q15048 493 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms