RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 YY2O15391 372 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 INSIG1O15503 277 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 LZTS3O60299 673 aaPredicted RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 TM7SF2O76062 418 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 KRT3P12035 628 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 TIMP2P16035 220 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 RBMS1P29558 406 aaKnown RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 RFC1P35251 1148 aaPredicted RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 SOX5P35711 763 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 TMPRSS3P57727 454 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 PTP4A2Q12974 167 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 PTK2BQ14289 1009 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 TAF1BQ53T94 588 aaPredicted RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 FAXCQ5TGI0 409 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 BROXQ5VW32 411 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 RBM44Q6ZP01 1051 aaKnown RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 SLC35F3Q8IY50 421 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 PYROXD2Q8N2H3 581 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 CXorf40AQ8TE69 158 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 ARHGEF26Q96DR7 871 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 GDAP1L1Q96MZ0 367 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 WRAP53Q9BUR4 548 aaKnown RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 BOCQ9BWV1 1114 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 TTYH3Q9C0H2 523 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 CLPBQ9H078 707 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 NOL6Q9H6R4 1146 aaKnown RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 ENTPD2Q9Y5L3 495 aa17.08■□□□□ 0.32
CLN3-211ENST00000564091 TP53BP1Q12888 1972 aaPredicted RBP17.08■□□□□ 0.32
CLN3-211ENST00000564091 NYNRINQ9P2P1 1898 aaKnown RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 LMO7DNF2Z398 122 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 ANXA6P08133 673 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 CELA2BP08218 269 aaPredicted RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 TSHRP16473 764 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 EPHB2P29323 1055 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 EIF4A3P38919 411 aaKnown RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 JAM2P57087 298 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 CFHR1Q03591 330 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 C1QBPQ07021 282 aaKnown RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 TCEA2Q15560 299 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 KLHL40Q2TBA0 621 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 C6orf132Q5T0Z8 1188 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 FOXR1Q6PIV2 292 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 WDR59Q6PJI9 974 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 ZNF605Q86T29 641 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 TP53I13Q8NBR0 393 aaPredicted RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 TPCN2Q8NHX9 752 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 PRR11Q96HE9 360 aaPredicted RBP17.07■□□□□ 0.32
CLN3-211ENST00000564091 SLC46A1Q96NT5 459 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 EPAS1Q99814 870 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLN3-211ENST00000564091 ADAM22Q9P0K1 906 aa17.07■□□□□ 0.32
CLN3-211ENST00000564091 ZSCAN5CA6NGD5 496 aaPredicted RBP17.06■□□□□ 0.32
CLN3-211ENST00000564091 ERVH48-1M5A8F1 160 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 IGSF6O95976 241 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 UNGP13051 313 aaPredicted RBP17.06■□□□□ 0.32
CLN3-211ENST00000564091 PLA2G2AP14555 144 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 GPD1P21695 349 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 RPIAP49247 311 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 UCNP55089 124 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 RHOAP61586 193 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 YPEL5P62699 121 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 PPARDQ03181 441 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 RAD51Q06609 339 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 KRT31Q15323 416 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 SCYL2Q6P3W7 929 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 SLFN11Q7Z7L1 901 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 RTL3Q8N8U3 475 aaKnown RBP17.06■□□□□ 0.32
CLN3-211ENST00000564091 GLMNQ92990 594 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 NTAN1Q96AB6 310 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 HMCESQ96FZ2 354 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 EXOC2Q96KP1 924 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 SELENOOQ9BVL4 669 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 SLC13A1Q9BZW2 595 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 NUP62CLQ9H1M0 184 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 SYNDIG1Q9H7V2 258 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 COQ6Q9Y2Z9 468 aa17.06■□□□□ 0.32
CLN3-211ENST00000564091 PIGNO95427 931 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 STAT1P42224 750 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 NSFP46459 744 aaKnown RBP17.05■□□□□ 0.32
CLN3-211ENST00000564091 PDX1P52945 283 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 IRF4Q15306 451 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 INO80DQ53TQ3 878 aaPredicted RBP17.05■□□□□ 0.32
CLN3-211ENST00000564091 IGF2-ASQ6U949 168 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 TRIM72Q6ZMU5 477 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 MACC1Q6ZN28 852 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 NYAP1Q6ZVC0 841 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 TSACCQ96A04 125 aaPredicted RBP17.05■□□□□ 0.32
CLN3-211ENST00000564091 GRAMD1AQ96CP6 724 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 CCDC3Q9BQI4 270 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 C1QTNF7Q9BXJ2 289 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 DPH1Q9BZG8 443 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 DKK3Q9UBP4 350 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 GULP1Q9UBP9 304 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 PADI4Q9UM07 663 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 MFHAS1Q9Y4C4 1052 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 PCDHGA8Q9Y5G5 932 aa17.05■□□□□ 0.32
CLN3-211ENST00000564091 MYLKQ15746 1914 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 RASA4BC9J798 803 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 RIOK3O14730 519 aaKnown RBP17.04■□□□□ 0.32
CLN3-211ENST00000564091 CCP110O43303 1012 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms