RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RHOAP61586 193 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 YPEL5P62699 121 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 DAB2P98082 770 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 PDE1CQ14123 709 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 GRM3Q14832 879 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 CYTH1Q15438 398 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 TMEM52BQ4KMG9 183 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 TPRG1LQ5T0D9 272 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 ZNF548Q8NEK5 533 aaPredicted RBP17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 FNIP1Q8TF40 1166 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 HNRNPLLQ8WVV9 542 aaKnown RBP17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 CAAP1Q9H8G2 361 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 EVA1BQ9NVM1 165 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 AIPL1Q9NZN9 384 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 TMEM63CQ9P1W3 806 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 LHX3Q9UBR4 397 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 KLF15Q9UIH9 416 aa17.43■□□□□ 0.38
VPS9D1-203ENST00000563798 A0A1W2PQC6 194 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 TMEM191CA6NGB0 347 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 PRAMEF11O60813 436 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 MT-CO3P00414 261 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 HOXB3P14651 431 aaPredicted RBP17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 PRKCIP41743 596 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 EIF2B5Q13144 721 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 ZNF542PQ5EBM4 170 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 ZCCHC8Q6NZY4 707 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 ZNF354CQ86Y25 554 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 ARFGAP1Q8N6T3 406 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 BTN2A2Q8WVV5 523 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 NCKIPSDQ9NZQ3 722 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 IPO11Q9UI26 975 aaKnown RBP17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 SALL4Q9UJQ4 1053 aa17.42■□□□□ 0.38
VPS9D1-203ENST00000563798 AQP9O43315 295 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 OPA1O60313 960 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 TM7SF2O76062 418 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 IGFALSP35858 605 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 EIF2S3P41091 472 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 CSNK1DP48730 415 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 TPI1P60174 286 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 PTK2BQ14289 1009 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 AGERQ15109 404 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 ANO6Q4KMQ2 910 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 ERMARDQ5T6L9 678 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 AFMIDQ63HM1 303 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 DNAAF5Q86Y56 855 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 PSTKQ8IV42 348 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 TP53I13Q8NBR0 393 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 SNIP1Q8TAD8 396 aaKnown RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 ZNF641Q96N77 438 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 C1QTNF7Q9BXJ2 289 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 EDEM3Q9BZQ6 932 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 UBA2Q9UBT2 640 aaPredicted RBP17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 AP4E1Q9UPM8 1137 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 MYLKQ15746 1914 aa17.41■□□□□ 0.38
VPS9D1-203ENST00000563798 LRRC53A6NM62 1247 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 SMTNL1A8MU46 457 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 INSIG1O15503 277 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 TLX3O43711 291 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 MMP20O60882 483 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 JUNDP17535 347 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 PSMA2P25787 234 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 HCAR3P49019 387 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 ZNF135P52742 658 aaPredicted RBP17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 ELP6Q0PNE2 266 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 CXorf40AQ8TE69 158 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 TUBGCP5Q96RT8 1024 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 SUV39H2Q9H5I1 410 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 HAUS4Q9H6D7 363 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 AK5Q9Y6K8 562 aa17.4■□□□□ 0.38
VPS9D1-203ENST00000563798 A0A1B0GTH6 734 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 CFAP69A5D8W1 941 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 ARHGAP42A6NI28 874 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 J3KR12 359 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 EEF2KO00418 725 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 NEBLO76041 1014 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 ITIH2P19823 946 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 PEX5P50542 639 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 THOP1P52888 689 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 ASIC2Q16515 512 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 CA9Q16790 459 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 UGP2Q16851 508 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 FILIP1LQ4L180 1135 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 SOWAHCQ53LP3 525 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 BRAT1Q6PJG6 821 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 MACC1Q6ZN28 852 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 CYP4V2Q6ZWL3 525 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 ZNF571Q7Z3V5 609 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 VPS36Q86VN1 386 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 NETO2Q8NC67 525 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 PEBP4Q96S96 227 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 NCAPGQ9BPX3 1015 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 SNRNP25Q9BV90 132 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 BOCQ9BWV1 1114 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 SLC39A8Q9C0K1 460 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 MBNL1Q9NR56 388 aaKnown RBP17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 GPATCH2LQ9NWQ4 482 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 SPASTQ9UBP0 616 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 IGSF10Q6WRI0 2623 aa17.39■□□□□ 0.37
VPS9D1-203ENST00000563798 TDRD6O60522 2096 aaKnown RBP17.38■□□□□ 0.37
VPS9D1-203ENST00000563798 ATRXP46100 2492 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms