RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ZNF431Q8TF32 576 aaPredicted RBP6.31□□□□□ -1.4
CLK3-212ENST00000563418 ATXN7L3BQ96GX2 97 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 PRAMEF1O95521 474 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 FADS2O95864 444 aaKnown RBP6.31□□□□□ -1.4
CLK3-212ENST00000563418 ABL1P00519 1130 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 PROZP22891 400 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 RRM1P23921 792 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 FADDQ13158 208 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 PRKD1Q15139 912 aaPredicted RBP6.31□□□□□ -1.4
CLK3-212ENST00000563418 CARTPTQ16568 116 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 LIPMQ5VYY2 423 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 PRR5LQ6MZQ0 368 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 C3orf67Q6ZVT6 689 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 ATAD1Q8NBU5 361 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 HAVCR1Q96D42 359 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 TRMOQ9BU70 441 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 NGRNQ9NPE2 291 aaKnown RBP6.31□□□□□ -1.4
CLK3-212ENST00000563418 CPQQ9Y646 472 aa6.31□□□□□ -1.4
CLK3-212ENST00000563418 FAM220BPB1ANY3 271 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TIPRLO75663 272 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 NR4A1P22736 598 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 IL6STP40189 918 aaPredicted RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 NR2C2P49116 596 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CLEC16AQ2KHT3 1053 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 STXBP5Q5T5C0 1151 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CHERPQ8IWX8 916 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 CDC26Q8NHZ8 85 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ANKRA2Q9H9E1 313 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CCDC167Q9P0B6 97 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SH3BP4Q9P0V3 963 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SPEF2Q9C093 1822 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TEX46H3BTG2 121 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLITRK5O94991 958 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TDP2O95551 362 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TNNI3P19429 210 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FOXN2P32314 431 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PRELPP51888 382 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 DGKQP52824 942 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FNBP1LQ5T0N5 605 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PNCKQ6P2M8 343 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC9A9Q8IVB4 645 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC43A3Q8NBI5 491 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 GALNT11Q8NCW6 608 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 C9orf43Q8TAL5 461 aaPredicted RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 TRPM4Q8TD43 1214 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC44A1Q8WWI5 657 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FAM89AQ96GI7 184 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 C12orf66Q96MD2 445 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TRIM62Q9BVG3 475 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 GRHL1Q9NZI5 618 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CEPT1Q9Y6K0 416 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 E2F8A0AVK6 867 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 APOC4-APOC2K7ER74 178 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 RP2O75695 350 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 APOC1P02654 83 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 APOC2P02655 101 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 DCKP27707 260 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PICALMQ13492 652 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FGL2Q14314 439 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 AGAP6Q5VW22 663 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TMEM199Q8N511 208 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ADAMTS16Q8TE57 1224 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 AGAP4Q96P64 663 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PSD2Q9BQI7 771 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ROGDIQ9GZN7 287 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 KANSL2Q9H9L4 492 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.3□□□□□ -1.4
CLK3-212ENST00000563418 PRR12Q9ULL5 1215 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FAM205AQ6ZU69 1335 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ATP6AP2A0A1C7CYW4 349 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TSTD3H0UI37 97 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 MUSKO15146 869 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 MYL9P24844 172 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CD83Q01151 205 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 GNA13Q14344 377 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CYP2A13Q16696 494 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FAM20CQ8IXL6 584 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC4A9Q96Q91 983 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 IDI2Q9BXS1 227 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 OGDHLQ9ULD0 1010 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CORO2BQ9UQ03 480 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PCDHA11Q9Y5I1 949 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CRB1P82279 1406 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 H0Y858 1186 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PSMA3P25788 255 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 STK11Q15831 433 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PKN1Q16512 942 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ARHGAP36Q6ZRI8 547 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PTF1AQ7RTS3 328 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 COMMD7Q86VX2 200 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 KIAA0895Q8NCT3 520 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CNDP2Q96KP4 475 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 TAS2R7Q9NYW3 318 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 NELFEP18615 380 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 EIF5AP63241 154 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC1A5Q15758 541 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ZNF699Q32M78 642 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC15A4Q8N697 577 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FAM84AQ96KN4 292 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ACTR3BQ9P1U1 418 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms