RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 HAUS2Q9NVX0 235 aa16.91■□□□□ 0.3
CLK3-207ENST00000562389 EIF2B4Q9UI10 523 aaKnown RBP16.91■□□□□ 0.3
CLK3-207ENST00000562389 GON4LQ3T8J9 2241 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.9■□□□□ 0.3
CLK3-207ENST00000562389 A0A1W2PPC4 97 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 LATO43561 262 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 CCNB1P14635 433 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 GNSP15586 552 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 PECAM1P16284 738 aaPredicted RBP16.9■□□□□ 0.3
CLK3-207ENST00000562389 CD27P26842 260 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 MAOBP27338 520 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 SERPINA4P29622 427 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 ABL2P42684 1182 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 PPP2CBP62714 309 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 PPP2CAP67775 309 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 IFI35P80217 286 aaPredicted RBP16.9■□□□□ 0.3
CLK3-207ENST00000562389 BCL2L1Q07817 233 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 DUOXA1Q1HG43 343 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 SLC23A3Q6PIS1 610 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 PRR23CQ6ZRP0 262 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 C1orf216Q8TAB5 229 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 LRRN4Q8WUT4 740 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 P3H4Q92791 437 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 ORAI3Q9BRQ5 295 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 OSBPL8Q9BZF1 889 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 SMOC1Q9H4F8 434 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 NT5MQ9NPB1 228 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 SCUBE2Q9NQ36 999 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 FADS3Q9Y5Q0 445 aa16.9■□□□□ 0.3
CLK3-207ENST00000562389 ZFHX2Q9C0A1 2572 aaPredicted RBP16.9■□□□□ 0.3
CLK3-207ENST00000562389 PCDH15Q96QU1 1955 aa16.89■□□□□ 0.3
CLK3-207ENST00000562389 RIF1Q5UIP0 2472 aaKnown RBP16.89■□□□□ 0.29
CLK3-207ENST00000562389 A0A1B0GTW7 788 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 APOC4-APOC2K7ER74 178 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 TRAFD1O14545 582 aaPredicted RBP16.89■□□□□ 0.29
CLK3-207ENST00000562389 KHNYNO15037 678 aaKnown RBP16.89■□□□□ 0.29
CLK3-207ENST00000562389 GJB3O75712 270 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 APOC2P02655 101 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 PYGMP11217 842 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 NUDT1P36639 197 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 SUOXP51687 545 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 MAXP61244 160 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 AP1B1Q10567 949 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 TRIM61Q5EBN2 209 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 BRAT1Q6PJG6 821 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 ZSCAN30Q86W11 494 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 CAMK1DQ8IU85 385 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 ECHDC3Q96DC8 303 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 NSMCE3Q96MG7 304 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 IL12RB2Q99665 862 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 HERPUD2Q9BSE4 406 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 HEMGNQ9BXL5 484 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 POLR1EQ9GZS1 481 aaKnown RBP16.89■□□□□ 0.29
CLK3-207ENST00000562389 MIR1-1HGQ9H1L0 117 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 RBM22Q9NW64 420 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLK3-207ENST00000562389 SAE1Q9UBE0 346 aaPredicted RBP16.89■□□□□ 0.29
CLK3-207ENST00000562389 PIEZO1Q92508 2521 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 DOCK9Q9BZ29 2069 aa16.89■□□□□ 0.29
CLK3-207ENST00000562389 EP300Q09472 2414 aaPredicted RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 TRPM6Q9BX84 2022 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 PRR5-ARHGAP8B1AHC4 643 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 PATE3B3GLJ2 98 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 KCNK1O00180 336 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 BCAT2O15382 392 aaPredicted RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 SPINT1O43278 529 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 RNGTTO60942 597 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 SOCS5O75159 536 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 NEBLO76041 1014 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 HLA-DQB2P05538 268 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 SERPINF2P08697 491 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 TIMP2P16035 220 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 CES1P23141 567 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 ZBTB17Q13105 803 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 PRKD1Q15139 912 aaPredicted RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 SF3A2Q15428 464 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 CFAP58Q5T655 872 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 TCEAL6Q6IPX3 200 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 KIAA1161Q6NSJ0 714 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 AADACL2Q6P093 401 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 TTC7BQ86TV6 843 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 HORMAD1Q86X24 394 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 KIAA2013Q8IYS2 634 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 ZCCHC9Q8N567 271 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 C12orf50Q8NA57 414 aaPredicted RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 TRIM58Q8NG06 486 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 TFB1MQ8WVM0 346 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 SPOCK2Q92563 424 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 TCEAL3Q969E4 200 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 NUSAP1Q9BXS6 441 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 EBF2Q9HAK2 575 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 NOD2Q9HC29 1040 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 CAPN10Q9HC96 672 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 ATP8A1Q9Y2Q0 1164 aa16.88■□□□□ 0.29
CLK3-207ENST00000562389 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.88■□□□□ 0.29
CLK3-207ENST00000562389 A0A1W2PQ67 120 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 A0A1W2PQU0 124 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 TTC24A2A3L6 582 aaPredicted RBP16.87■□□□□ 0.29
CLK3-207ENST00000562389 UPK3BL1B0FP48 263 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 HACD1B0YJ81 288 aa16.87■□□□□ 0.29
CLK3-207ENST00000562389 UPK3BL2E5RIL1 263 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms