RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 NSFP46459 744 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 C1QBPQ07021 282 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CLEC16AQ2KHT3 1053 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PRRT3Q5FWE3 981 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CRTC1Q6UUV9 634 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PCSK4Q6UW60 755 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SLFN11Q7Z7L1 901 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PHF13Q86YI8 300 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PHACTR4Q8IZ21 702 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LSMEM2Q8N112 164 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TP53I13Q8NBR0 393 aaPredicted RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 C3orf20Q8ND61 904 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 BTN2A2Q8WVV5 523 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 GDAP1L1Q96MZ0 367 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 IL12RB2Q99665 862 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 LRRC61Q9BV99 259 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MBNL1Q9NR56 388 aaKnown RBP16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NCKIPSDQ9NZQ3 722 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SATB2Q9UPW6 733 aa16.91■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 TEX51A0A1B0GUA7 166 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ZSCAN5CA6NGD5 496 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 INSIG1O15503 277 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CCP110O43303 1012 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 THOP1P52888 689 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ERVPABLB-1P60509 514 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 C1orf61Q13536 156 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PTK2BQ14289 1009 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 NR0B2Q15466 257 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 KLHL40Q2TBA0 621 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 INO80DQ53TQ3 878 aaPredicted RBP16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 C3orf38Q5JPI3 329 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 PERM1Q5SV97 790 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 FKBP15Q5T1M5 1219 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MON1BQ7L1V2 547 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ZNF354CQ86Y25 554 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SLC35F3Q8IY50 421 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 HMCESQ96FZ2 354 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ATXN7L3BQ96GX2 97 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 EPAS1Q99814 870 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 WRAP53Q9BUR4 548 aaKnown RBP16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 CLPBQ9H078 707 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 FANCLQ9NW38 375 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 SPASTQ9UBP0 616 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 MFHAS1Q9Y4C4 1052 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 DAAM1Q9Y4D1 1078 aa16.9■□□□□ 0.3
VPS9D1-AS1-201ENST00000562298 ASXL3Q9C0F0 2248 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 SIGLEC16A6NMB1 481 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RASA4BC9J798 803 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 MUSKO15146 869 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RASA4O43374 803 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 TM7SF2O76062 418 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 IGSF6O95976 241 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CALB1P05937 261 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 TIMP2P16035 220 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 ZNF143P52747 638 aaPredicted RBP16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 ADKP55263 362 aaKnown RBP16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RHOAP61586 193 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 YPEL5P62699 121 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 C19orf57Q0VDD7 668 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 SERINC3Q13530 473 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 IRF4Q15306 451 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 SYCP1Q15431 976 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 EFHC2Q5JST6 749 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 C6orf132Q5T0Z8 1188 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 MACC1Q6ZN28 852 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 LSM14AQ8ND56 463 aaKnown RBP16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CXorf40AQ8TE69 158 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CASKIN2Q8WXE0 1202 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 EXOC2Q96KP1 924 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 DKK3Q9UBP4 350 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 LHX3Q9UBR4 397 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 ENTPD2Q9Y5L3 495 aa16.89■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 LRRK1Q38SD2 2015 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 PMS2P1A4D2B8 440 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 LMO7DNF2Z398 122 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RIOK3O14730 519 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 YY2O15391 372 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CREB3O43889 395 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 PIGNO95427 931 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 TPM2P07951 284 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CELA2BP08218 269 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 TSHRP16473 764 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 EIF4A3P38919 411 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 PDX1P52945 283 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 COPB1P53618 953 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 YBEYP58557 167 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RPL7AP62424 266 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RAD51Q06609 339 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CYTH1Q15438 398 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 PPP1R15BQ5SWA1 713 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 SCYL2Q6P3W7 929 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 IGF2-ASQ6U949 168 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 RBM44Q6ZP01 1051 aaKnown RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 PRR11Q96HE9 360 aaPredicted RBP16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 TBATAQ96M53 351 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 MCEEQ96PE7 176 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 C1QTNF7Q9BXJ2 289 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 CPNE5Q9HCH3 593 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 FZD10Q9ULW2 581 aa16.88■□□□□ 0.29
VPS9D1-AS1-201ENST00000562298 COQ6Q9Y2Z9 468 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms