RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CRTAMO95727 393 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 FYNP06241 537 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HOXB2P14652 356 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SGSHP51688 502 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GEMIN4P57678 1058 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MORF4L2Q15014 288 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PLEKHG6Q3KR16 790 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PRPF38BQ5VTL8 546 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NAIF1Q69YI7 327 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MRNIPQ6NTE8 343 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PARM1Q6UWI2 310 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CMC1Q7Z7K0 106 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 DSG4Q86SJ6 1040 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 VSIG1Q86XK7 387 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HDDC3Q8N4P3 179 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 OR13C4Q8NGS5 318 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CXorf40AQ8TE69 158 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GLMNQ92990 594 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HLA-CQ95604 372 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MRPL38Q96DV4 380 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 FAM111AQ96PZ2 611 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 OXCT2Q9BYC2 517 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NSRP1Q9H0G5 558 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 POLR3BQ9NW08 1133 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NINJ2Q9NZG7 142 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 RUVBL2Q9Y230 463 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NUMBLQ9Y6R0 609 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ZSWIM8A7E2V4 1837 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SLC25A14O95258 325 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HSPA4LO95757 839 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PCCBP05166 539 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 RALBP11234 206 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CDH5P33151 784 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 HADHAP40939 763 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MTHFRP42898 656 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 IFI35P80217 286 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ENPEPQ07075 957 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PLCL1Q15111 1095 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 INSCQ1MX18 579 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ITPRIPL2Q3MIP1 535 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF542PQ5EBM4 170 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 FYB2Q5VWT5 728 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 NEPROQ6NW34 567 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ESRP1Q6NXG1 681 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 FOXR1Q6PIV2 292 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 DPY19L3Q6ZPD9 716 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 USP45Q70EL2 814 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 OTOAQ7RTW8 1153 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TRIM48Q8IWZ4 208 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 STK40Q8N2I9 435 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MPP5Q8N3R9 675 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TXNDC5Q8NBS9 432 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CPT1BQ92523 772 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 MYO19Q96H55 970 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 DNAJC1Q96KC8 554 aaKnown RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 SAMD11Q96NU1 681 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CAPS2Q9BXY5 557 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 POMKQ9H5K3 350 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GPAMQ9HCL2 828 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ANLNQ9NQW6 1124 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CD274Q9NZQ7 290 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 TRHDEQ9UKU6 1024 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 PSMD13Q9UNM6 376 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CNTN6Q9UQ52 1028 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 USP15Q9Y4E8 981 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-209ENST00000560637 GPSM3Q9Y4H4 160 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 ARL5AQ9Y689 179 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 CLUHO75153 1309 aa5.5□□□□□ -1.53
VPS13C-209ENST00000560637 C1QTNF3-AMACRE9PGA6 284 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 KAT7O95251 611 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PAK4O96013 591 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 NCF2P19878 526 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PLIN5Q00G26 463 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 OVGP1Q12889 678 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 RUNX3Q13761 415 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PTPRNQ16849 979 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 TTC31Q49AM3 519 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PITRM1Q5JRX3 1037 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FNBP1LQ5T0N5 605 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SYDE1Q6ZW31 735 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 RAB44Q7Z6P3 723 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 NUDCD3Q8IVD9 361 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 NPAS3Q8IXF0 933 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 DCBLD1Q8N8Z6 715 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SCG3Q8WXD2 468 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CHFRQ96EP1 664 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SIPA1Q96FS4 1042 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CABS1Q96KC9 395 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HAPLN3Q96S86 360 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 BRD8Q9H0E9 1235 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC19Q9H756 370 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 WDR6Q9NNW5 1121 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PRDM6Q9NQX0 595 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 KLHL3Q9UH77 587 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 TRMT6Q9UJA5 497 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CDH7Q9ULB5 785 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CLEC4EQ9ULY5 219 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 OTOFQ9HC10 1997 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HTTP42858 3142 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms