RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PTPN1P18031 435 aaKnown RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TCN1P20061 433 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SAT1P21673 171 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PCSK6P29122 969 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PFKPQ01813 784 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 NRF1Q16656 503 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 INTS11Q5TA45 600 aaKnown RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FAM72AQ5TYM5 149 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 AGAP9Q5VTM2 703 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 KIAA0930Q6ICG6 404 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FAM72DQ6L9T8 149 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 DCLRE1AQ6PJP8 1040 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 FAM72BQ86X60 149 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TERB1Q8NA31 727 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PCYOX1LQ8NBM8 494 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TXNDC5Q8NBS9 432 aaKnown RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 C2CD4AQ8NCU7 369 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-231ENST00000557433 MARK4Q96L34 752 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PGLYRP2Q96PD5 576 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 TCF12Q99081 682 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 ADAMTS10Q9H324 1103 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 PLGRKTQ9HBL7 147 aa16.43■□□□□ 0.22
SHMT2-231ENST00000557433 SMIM28A0A1B0GU29 152 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 AQP12BA6NM10 295 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 H3BRB1 525 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 MRASO14807 208 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 SPTLC1O15269 473 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 NRP2O60462 931 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 JCHAINP01591 159 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 MYL3P08590 195 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 CCNCP24863 283 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 CYP2C18P33260 490 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 AVPR1AP37288 418 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 ARCN1P48444 511 aaKnown RBP16.42■□□□□ 0.22
SHMT2-231ENST00000557433 DAOAP59103 153 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 MAP7D1Q3KQU3 841 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 AGKQ53H12 422 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 ZBTB49Q6ZSB9 765 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 ERMP1Q7Z2K6 904 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 DHFR2Q86XF0 187 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 AQP12AQ8IXF9 295 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 PCDH20Q8N6Y1 951 aaKnown RBP16.42■□□□□ 0.22
SHMT2-231ENST00000557433 OR2T34Q8NGX1 318 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 OR2T3Q8NH03 318 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 ZSCAN18Q8TBC5 510 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-231ENST00000557433 SLCO4A1Q96BD0 722 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 TSPAN17Q96FV3 270 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 APOL2Q9BQE5 337 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 CXCL16Q9H2A7 254 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 TUT1Q9H6E5 874 aaKnown RBP16.42■□□□□ 0.22
SHMT2-231ENST00000557433 CAAP1Q9H8G2 361 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 RBPJLQ9UBG7 517 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 SNX13Q9Y5W8 968 aa16.42■□□□□ 0.22
SHMT2-231ENST00000557433 PRORSD1PA6NEY8 169 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 FBP2O00757 339 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 IPO13O94829 963 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 HTR7P34969 479 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 GEMP55040 296 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 NHSL2Q5HYW2 709 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 MARCH8Q5T0T0 291 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CLEC20AQ6ZU45 233 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CAMK1DQ8IU85 385 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 COLGALT2Q8IYK4 626 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CALML6Q8TD86 181 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 NDRG1Q92597 394 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 TFAP2CQ92754 450 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 ELMO2Q96JJ3 720 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 HOPXQ9BPY8 73 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 EIF2AQ9BY44 585 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 ENTPD7Q9NQZ7 604 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CNOT6Q9ULM6 557 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 MTF2Q9Y483 593 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 TCAF1Q9Y4C2 921 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 ZNF236Q9UL36 1845 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 PDCD11Q14690 1871 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CLASP2O75122 1294 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 FYNP06241 537 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 SLC26A3P40879 764 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 IREB2P48200 963 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 STX1BP61266 288 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 ZBED5Q49AG3 693 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 MTX3Q5HYI7 312 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 TECRLQ5HYJ1 363 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 PM20D1Q6GTS8 502 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 RWDD4Q6NW29 188 aaKnown RBP16.41■□□□□ 0.22
SHMT2-231ENST00000557433 TAPT1Q6NXT6 567 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CNSTQ6PJW8 725 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 PAOXQ6QHF9 649 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 GPR141Q7Z602 305 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 GALNT7Q86SF2 657 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 CEP97Q8IW35 865 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 BBS5Q8N3I7 341 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 FIBCD1Q8N539 461 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 FAM156AQ8NDB6 213 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 FNDC8Q8TC99 324 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 TRPM4Q8TD43 1214 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 HEXDCQ8WVB3 486 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 RANBP9Q96S59 729 aa16.41■□□□□ 0.22
SHMT2-231ENST00000557433 COLEC11Q9BWP8 271 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms