RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CPA5Q8WXQ8 436 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 AZIN2Q96A70 460 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 MYEOVQ96EZ4 313 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 MYO19Q96H55 970 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 SLC39A13Q96H72 371 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 KRT12Q99456 494 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 DDX50Q9BQ39 737 aaKnown RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 TRIM62Q9BVG3 475 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 OSBPL2Q9H1P3 480 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 ACBD3Q9H3P7 528 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 FBRSQ9HAH7 460 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 ABCB8Q9NUT2 735 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 UCKL1Q9NWZ5 548 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 SLC12A6Q9UHW9 1150 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 XPO7Q9UIA9 1087 aaKnown RBP12.76□□□□□ -0.37
SHMT2-230ENST00000557427 PLA2G4CQ9UP65 541 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 NCKAP1Q9Y2A7 1128 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 U3KQA8 63 aa12.76□□□□□ -0.37
SHMT2-230ENST00000557427 CCDC66A2RUB6 948 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 BHMG1C9JSJ3 638 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 MID1O15344 667 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 LZTS3O60299 673 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 LSM8O95777 96 aaKnown RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 APOEP02649 317 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 CKMT1AP12532 417 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 COMTP21964 271 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 CD70P32970 193 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 CTNNA1P35221 906 aaKnown RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 CCR5P51681 352 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 C1QBPQ07021 282 aaKnown RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 GPS2Q13227 327 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 NME3Q13232 169 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 SRSF6Q13247 344 aaKnown RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 MESDQ14696 234 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 ISXQ2M1V0 245 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 NAA35Q5VZE5 725 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 RAP1GAP2Q684P5 730 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 BEND5Q7L4P6 421 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 PHLDB2Q86SQ0 1253 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 LGI2Q8N0V4 545 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 OXR1Q8N573 874 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 MFSD2AQ8NA29 543 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 OR4C6Q8NH72 309 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 WFDC5Q8TCV5 224 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 GANCQ8TET4 914 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 C18orf8Q96DM3 657 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 CCNL2Q96S94 520 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.75□□□□□ -0.37
SHMT2-230ENST00000557427 DDIT4Q9NX09 232 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 GGA2Q9UJY4 613 aa12.75□□□□□ -0.37
SHMT2-230ENST00000557427 GOLGA8SH3BPF8 625 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 KRIT1O00522 736 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 IRAK2O43187 625 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 HSF2BPO75031 334 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 HEXIM1O94992 359 aaKnown RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 GLI1P08151 1106 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 POLR2EP19388 210 aaKnown RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 TACR2P21452 398 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 DGKAP23743 735 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 RBMS1P29558 406 aaKnown RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 CDH5P33151 784 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 SLC1A1P43005 524 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 PEX5P50542 639 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 PPP2CBP62714 309 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 PPP2CAP67775 309 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 SLC7A5Q01650 507 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 NNTQ13423 1086 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 MS4A13Q5J8X5 152 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 MBLAC2Q68D91 279 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 EMBQ6PCB8 327 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 OLFML1Q6UWY5 402 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 XKR5Q6UX68 686 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 MFN1Q8IWA4 741 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 CCDC117Q8IWD4 279 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ATP6V0D2Q8N8Y2 350 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 HJURPQ8NCD3 748 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ALG3Q92685 438 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ATXN7L3BQ96GX2 97 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 SLC2A13Q96QE2 648 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 SEMA3CQ99985 751 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ASNSD1Q9NWL6 643 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 PCDHA3Q9Y5H8 950 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 ENTPD2Q9Y5L3 495 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 SCINQ9Y6U3 715 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 KIF26BQ2KJY2 2108 aa12.74□□□□□ -0.37
SHMT2-230ENST00000557427 DOCK9Q9BZ29 2069 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 TYW5A2RUC4 315 aaKnown RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 LRRC72A6NJI9 287 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 TMEM110-MUSTN1A8MSY1 372 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 KCNU1A8MYU2 1149 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 M0QYT0 321 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 RAD51CO43502 376 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 LATO43561 262 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 SIN3BO75182 1162 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 RNASEH2AO75792 299 aaKnown RBP12.73□□□□□ -0.37
SHMT2-230ENST00000557427 KRT38O76015 456 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 FGGP02679 453 aa12.73□□□□□ -0.37
SHMT2-230ENST00000557427 DLDP09622 509 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms