RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CD38P28907 300 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 MAT2AP31153 395 aaKnown RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 MMP13P45452 471 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 CSNK1EP49674 416 aaKnown RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 SCNN1BP51168 640 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 C21orf59P57076 290 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 AP1S1P61966 158 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 BCL2L1Q07817 233 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 HNRNPDQ14103 355 aaKnown RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 TFDP2Q14188 446 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 SLC9A4Q6AI14 798 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 BRAT1Q6PJG6 821 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 BZW1Q7L1Q6 419 aaKnown RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 RFX6Q8HWS3 928 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 KATNAL2Q8IYT4 538 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 RCOR2Q8IZ40 523 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 MINDY1Q8N5J2 469 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 KIAA1524Q8TCG1 905 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 RNF25Q96BH1 459 aaPredicted RBP12.63□□□□□ -0.39
SLIRP-209ENST00000557342 HDAC11Q96DB2 347 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 SLC6A18Q96N87 628 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 TSGA13Q96PP4 275 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 EBF2Q9HAK2 575 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 FSCN3Q9NQT6 498 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 AMACRQ9UHK6 382 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 SALL4Q9UJQ4 1053 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 ANKRD6Q9Y2G4 727 aa12.63□□□□□ -0.39
SLIRP-209ENST00000557342 A0A1B0GVT2 93 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 A0A1W2PQ67 120 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 TSPAN11A1L157 253 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 VILLO15195 856 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 MATN3O15232 486 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 NRDCO43847 1150 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 NEBLO76041 1014 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 ZRANB2O95218 330 aaKnown RBP eCLIP12.62□□□□□ -0.39
SLIRP-209ENST00000557342 PIGNO95427 931 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 AKT2P31751 481 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 ABL2P42684 1182 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 RGRP47804 291 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 POLR2LP62875 67 aaKnown RBP12.62□□□□□ -0.39
SLIRP-209ENST00000557342 GBE1Q04446 702 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 ELP6Q0PNE2 266 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 OVGP1Q12889 678 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 STAT4Q14765 748 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 ZNF284Q2VY69 593 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 TEX26Q8N6G2 289 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 PAF1Q8N7H5 531 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 PLD5Q8N7P1 536 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 FAM174AQ8TBP5 190 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 MAML1Q92585 1016 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 VOPP1Q96AW1 172 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 RBM41Q96IZ5 413 aaKnown RBP12.62□□□□□ -0.39
SLIRP-209ENST00000557342 NUDCD1Q96RS6 583 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 MGME1Q9BQP7 344 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 LACRTQ9GZZ8 138 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 GOLPH3Q9H4A6 298 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 SCUBE2Q9NQ36 999 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 DNAAF2Q9NVR5 837 aaKnown RBP12.62□□□□□ -0.39
SLIRP-209ENST00000557342 DTLQ9NZJ0 730 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 DUSP10Q9Y6W6 482 aa12.62□□□□□ -0.39
SLIRP-209ENST00000557342 PPP1R12AO14974 1030 aaPredicted RBP12.61□□□□□ -0.39
SLIRP-209ENST00000557342 AREL1O15033 823 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 MUSKO15146 869 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 ARHGAP6O43182 974 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 DFNA5O60443 496 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 TIMP2P16035 220 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CR2P20023 1033 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 HNRNPA2B1P22626 353 aaKnown RBP12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CES1P23141 567 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 NFKBIAP25963 317 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CDKN2BP42772 138 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 SGCGQ13326 291 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 SLC14A1Q13336 389 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 PDK1Q15118 436 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 TAZQ16635 292 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 UGP2Q16851 508 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 UAP1L1Q3KQV9 507 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 TMEM259Q4ZIN3 620 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 TFDP3Q5H9I0 405 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 ERAP2Q6P179 960 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 MFSD7Q6UXD7 560 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 SPOCD1Q6ZMY3 1216 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 DGLUCYQ7Z3D6 616 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 IQCHQ86VS3 1027 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CAMK1DQ8IU85 385 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CCDC13Q8IYE1 715 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 SYCE1Q8N0S2 351 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 MFSD2AQ8NA29 543 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CCNYQ8ND76 341 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 EXD1Q8NHP7 514 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 CXorf40AQ8TE69 158 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 ASB12Q8WXK4 309 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 DESI2Q9BSY9 194 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 SLC17A9Q9BYT1 436 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 TSGA10Q9BZW7 698 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 POLR1EQ9GZS1 481 aaKnown RBP12.61□□□□□ -0.39
SLIRP-209ENST00000557342 BRD8Q9H0E9 1235 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 GAREM1Q9H706 876 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 GRPEL1Q9HAV7 217 aa12.61□□□□□ -0.39
SLIRP-209ENST00000557342 ZFR2Q9UPR6 939 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms