RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PECAM1P16284 738 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 TGM1P22735 817 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 CD27P26842 260 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SERPINA4P29622 427 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 TAS2R38P59533 333 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 PPP2CBP62714 309 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 PPP2CAP67775 309 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 BCL2L1Q07817 233 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 ADCY2Q08462 1091 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 AP1B1Q10567 949 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 DUOXA1Q1HG43 343 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 RALGPS1Q5JS13 557 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 CAMK1DQ8IU85 385 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 PGBD5Q8N414 524 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 CEP76Q8TAP6 659 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 HCAR2Q8TDS4 363 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 P3H4Q92791 437 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 RAB7BQ96AH8 199 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 HES6Q96HZ4 224 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 NUDCD1Q96RS6 583 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 POLR1EQ9GZS1 481 aaKnown RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 KCNF1Q9H3M0 494 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SMOC1Q9H4F8 434 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SUV39H2Q9H5I1 410 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 NT5MQ9NPB1 228 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SCUBE2Q9NQ36 999 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 RBM22Q9NW64 420 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SAE1Q9UBE0 346 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 AMACRQ9UHK6 382 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 EIF2B4Q9UI10 523 aaKnown RBP13.74□□□□□ -0.21
SHMT2-228ENST00000557302 EFR3BQ9Y2G0 817 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 SSUH2Q9Y2M2 353 aa13.74□□□□□ -0.21
SHMT2-228ENST00000557302 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TTC24A2A3L6 582 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 C10orf142B7Z368 130 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 APOC4-APOC2K7ER74 178 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 KCNK1O00180 336 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 KHNYNO15037 678 aaKnown RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 AP1G1O43747 822 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 GJB3O75712 270 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 PCDH8O95206 1070 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 JCHAINP01591 159 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 APOC2P02655 101 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 CFIP05156 583 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 PYGMP11217 842 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 CR2P20023 1033 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 XPAP23025 273 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 MAXP61244 160 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 IFI35P80217 286 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 ITKQ08881 620 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TRIM61Q5EBN2 209 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TCEAL6Q6IPX3 200 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 NEK5Q6P3R8 708 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 BRAT1Q6PJG6 821 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 PRR23CQ6ZRP0 262 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TTC7BQ86TV6 843 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TRIM69Q86WT6 500 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 KIAA2013Q8IYS2 634 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 PIP4P2Q8N4L2 257 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 ZCCHC9Q8N567 271 aaKnown RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 PAF1Q8N7H5 531 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 C12orf50Q8NA57 414 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TCEAL3Q969E4 200 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 HAUS1Q96CS2 278 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 NOD2Q9HC29 1040 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 TTLL3Q9Y4R7 772 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 FADS3Q9Y5Q0 445 aa13.73□□□□□ -0.21
SHMT2-228ENST00000557302 A0A1B0GTW7 788 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 A0A1W2PPC4 97 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 A0A1W2PQU0 124 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 TSPAN11A1L157 253 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 PRR5-ARHGAP8B1AHC4 643 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 PATE3B3GLJ2 98 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 NEMP1O14524 444 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 BCAT2O15382 392 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 ZSCAN12O43309 604 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 LATO43561 262 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 RNGTTO60942 597 aaKnown RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 TJP3O95049 919 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 TIMP2P16035 220 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 CES1P23141 567 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 NUDT1P36639 197 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 ABL2P42684 1182 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 SUOXP51687 545 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 ZNF211Q13398 564 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 PRKD1Q15139 912 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 RPS6KA1Q15418 735 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 SF3A2Q15428 464 aaKnown RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 AADACL2Q6P093 401 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 PRPF39Q86UA1 669 aaKnown RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 HORMAD1Q86X24 394 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 TRIM58Q8NG06 486 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 C1orf216Q8TAB5 229 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 TFB1MQ8WVM0 346 aaKnown RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 IL12RB2Q99665 862 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 SEMA3CQ99985 751 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 NUSAP1Q9BXS6 441 aaKnown RBP13.72□□□□□ -0.21
SHMT2-228ENST00000557302 SEPT10Q9P0V9 454 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 SLC6A14Q9UN76 642 aa13.72□□□□□ -0.21
SHMT2-228ENST00000557302 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms