RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MXI1P50539 228 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 PEX5P50542 639 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 PAPOLAP51003 745 aaKnown RBP3.96□□□□□ -1.78
SCFD1-216ENST00000555550 HDAC4P56524 1084 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 TUBA1BP68363 451 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 CYP4A11Q02928 519 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 FAM27E3Q08E93 113 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 RUNX2Q13950 521 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 LPIN1Q14693 890 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 ANKRD1Q15327 319 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 SLC18A3Q16572 532 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 KIF19Q2TAC6 998 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 EDRF1Q3B7T1 1238 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 NAPEPLDQ6IQ20 393 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 IL20RBQ6UXL0 311 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 MON1AQ86VX9 555 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 DENND6AQ8IWF6 608 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 STAMQ92783 540 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 SH3KBP1Q96B97 665 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 IGSF21Q96ID5 467 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 COG8Q96MW5 612 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 DUX5Q96PT3 197 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 RPS6KC1Q96S38 1066 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 CLK4Q9HAZ1 481 aaKnown RBP3.96□□□□□ -1.78
SCFD1-216ENST00000555550 ALKBH4Q9NXW9 302 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 MALT1Q9UDY8 824 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 CLDN16Q9Y5I7 305 aa3.96□□□□□ -1.78
SCFD1-216ENST00000555550 IGLV5-52A0A0A0MRZ9 124 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 LOC102724159A0A0B4J2E5 919 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 KLK10O43240 276 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 NBNO60934 754 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 ATP2C2O75185 946 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 CH25HO95992 272 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 LDHAP00338 332 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 MYF6P23409 242 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 LIFRP42702 1097 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 BNC1Q01954 994 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 POU3F1Q03052 451 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 SLC18A2Q05940 514 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 GRSF1Q12849 480 aaKnown RBP eCLIP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 PWP2Q15269 919 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 SF3B4Q15427 424 aaKnown RBP eCLIP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 PLEKHO1Q53GL0 409 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 XKR9Q5GH70 373 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 CEP85LQ5SZL2 805 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 CES5AQ6NT32 575 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 KLHL24Q6TFL4 600 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 NEK10Q6ZWH5 1172 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 MB21D2Q8IYB1 491 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 CCDC105Q8IYK2 499 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 MCPH1Q8NEM0 835 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 ZMIZ2Q8NF64 920 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 SPPL3Q8TCT6 385 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 GDPD5Q8WTR4 605 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 TRIB2Q92519 343 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 CNOT9Q92600 299 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 WBP2Q969T9 261 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 OTULINQ96BN8 352 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 ADGRG7Q96K78 797 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 YME1L1Q96TA2 773 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 MSTO1Q9BUK6 570 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 SLC32A1Q9H598 525 aa3.95□□□□□ -1.78
SCFD1-216ENST00000555550 STN1Q9H668 368 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 DDX31Q9H8H2 851 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 SPATS2LQ9NUQ6 558 aaKnown RBP3.95□□□□□ -1.78
SCFD1-216ENST00000555550 ERI2A8K979 691 aaKnown RBP3.94□□□□□ -1.78
SCFD1-216ENST00000555550 TIMM23O14925 209 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 SLC16A5O15375 505 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 CHRM4P08173 479 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 DAOP14920 347 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 ADORA2A-AS1P86434 159 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 ST3GAL1Q11201 340 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 MYBPHQ13203 477 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 WBP2NLQ6ICG8 309 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 PRSS45Q7RTY3 260 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 SUGP1Q8IWZ8 645 aaKnown RBP3.94□□□□□ -1.78
SCFD1-216ENST00000555550 SPATA5Q8NB90 893 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 NEXN-AS1Q8NBZ9 246 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 TBC1D20Q96BZ9 403 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 MTBPQ96DY7 904 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 CD180Q99467 661 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 MROH8Q9H579 483 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 RASSF1Q9NS23 344 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 OR6C3Q9NZP0 311 aa3.94□□□□□ -1.78
SCFD1-216ENST00000555550 MORC2Q9Y6X9 1032 aaPredicted RBP3.94□□□□□ -1.78
SCFD1-216ENST00000555550 VWA3AA6NCI4 1184 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 BUB3O43684 328 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 CEP104O60308 925 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 TCEA3O75764 348 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 KRT36O76013 467 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 SNRNP70P08621 437 aaKnown RBP3.93□□□□□ -1.78
SCFD1-216ENST00000555550 CENPAP49450 140 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 SLC12A1Q13621 1099 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 NAA25Q14CX7 972 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.93□□□□□ -1.78
SCFD1-216ENST00000555550 CPXM2Q8N436 756 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 LILRB1Q8NHL6 650 aaPredicted RBP3.93□□□□□ -1.78
SCFD1-216ENST00000555550 RAB40AQ8WXH6 277 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 ARPC5LQ9BPX5 153 aa3.93□□□□□ -1.78
SCFD1-216ENST00000555550 PTPRHQ9HD43 1115 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms